JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FGL2_chr7_77188369_77204819	0/0	a0005	439	1	0	0	0	0	1	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	a0006	439	1	0	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGR_chr1_27607064_27640185	1/1	a0001	529	276	91	62	77	14	30	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	a0002	529	1	0	0	1	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	a0003	529	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FHAD1_chr1_15242223_15403328	1/1	a0001	1479	75	10	15	29	3	16	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0002	1479	33	9	3	14	2	5	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0003	1479	22	3	5	12	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0004	1479	21	4	4	12	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0005	1479	15	2	4	2	3	4	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0006	1479	9	0	1	7	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0007	1479	9	7	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0008	1479	8	1	0	6	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0009	1479	8	1	4	1	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0010	1479	5	0	4	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0011	1479	5	0	0	5	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0012	1479	5	2	2	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0013	1479	4	0	1	1	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0014	1479	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0015	1479	3	0	0	3	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0016	1479	3	2	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0017	1479	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0018	1479	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0019	1479	3	1	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0020	1479	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0021	1479	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0022	1479	2	0	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0023	1479	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0024	1479	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0025	1479	2	0	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0026	1479	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0027	1479	2	0	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0028	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0029	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0030	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0031	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0032	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0033	1479	1	0	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0034	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0035	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0036	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0037	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0038	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0039	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0040	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0041	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0042	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0043	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0044	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0045	1479	1	0	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328