JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FHAD1_chr1_15242223_15403328	0/0	a0046	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0047	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0048	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0049	1435	1	0	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0050	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0051	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0052	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0053	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0054	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0055	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0056	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0057	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0058	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0059	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0060	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0061	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0062	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0063	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0064	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0065	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0066	1479	1	1	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0067	1479	1	0	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	a0068	1479	1	0	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHDC1_chr4_152931323_152984671	1/1	a0001	1143	170	57	30	57	1	23	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0002	1143	156	8	38	75	16	19	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0003	1143	30	8	2	19	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0004	1143	26	0	2	24	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0005	1143	9	0	0	9	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0006	1143	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0007	1143	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0008	1143	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0009	1143	3	0	0	3	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0010	1143	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0011	1143	2	0	2	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0012	1143	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0013	1143	2	2	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0014	1143	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0015	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0016	1147	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0017	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0018	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0019	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0020	1143	1	0	0	0	1	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0021	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0022	1143	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0023	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0024	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0025	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0026	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0027	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671