JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FHDC1_chr4_152931323_152984671	0/0	a0028	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0029	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0030	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0031	1143	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0032	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0033	1143	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0034	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	a0035	1143	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHIP1A_chr4_151404176_151675503	1/1	a0001	1040	236	64	45	99	6	20	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0002	1040	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0003	1040	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0004	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0005	1040	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0006	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0007	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0008	1040	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0009	1040	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0010	1040	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0011	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0012	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	a0013	1040	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1B_chr11_6206345_6239636	0/1	a0001	972	186	52	33	78	7	15	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	1/0	a0002	972	129	20	35	48	6	19	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0003	972	40	6	3	24	2	5	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0004	972	19	1	3	12	1	2	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0005	972	6	0	0	6	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0006	972	3	3	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0007	972	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0008	972	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0009	972	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0010	972	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0011	972	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0012	972	1	0	0	0	0	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	a0013	972	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP2A_chr10_114816780_114869717	1/1	a0001	765	320	87	65	122	13	31	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0002	765	3	0	0	3	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0003	765	3	3	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0004	765	1	0	0	1	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0005	765	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0006	765	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0007	765	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0008	765	1	0	0	0	0	1	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	a0009	765	1	0	0	0	1	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2B_chr8_22084150_22109911	1/1	a0001	743	237	59	60	80	15	21	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0002	743	122	34	15	55	2	16	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0003	743	16	0	1	14	0	1	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0004	743	3	1	2	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0005	743	2	0	1	0	1	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0006	743	2	0	0	0	0	2	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0007	743	2	0	0	2	0	0	copy fasta	FHIP2B	chr8	22084150	22109911