JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FHIP2B_chr8_22084150_22109911	0/0	a0008	743	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0009	757	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0010	743	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0011	743	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0012	743	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0013	743	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0014	743	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0015	743	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0016	743	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	a0017	743	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIT_chr3_59742277_61256452	0/0	a0001	147	45	25	16	0	0	4	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	a0002	147	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHL1_chrX_136142533_136216354	1/1	a0001	323	210	48	32	97	7	24	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	a0002	129	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	a0003	323	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136192047_136216354	1/1	a0001	296	291	62	43	142	13	29	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	a0002	296	2	0	0	2	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	a0003	296	1	0	1	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	a0004	145	1	0	0	1	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	a0005	296	1	0	0	0	0	1	copy fasta	FHL1	chrX	136192047	136216354
FHL2_chr2_105355826_105404051	1/1	a0001	279	440	90	67	219	16	46	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	a0002	279	6	6	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	a0003	279	1	0	0	1	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	a0004	279	1	0	1	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL3_chr1_37991770_38010514	1/1	a0001	280	451	93	82	210	16	48	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	a0002	280	6	6	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	a0003	280	1	1	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL5_chr6_96558128_96623626	0/1	a0001	284	198	48	25	94	7	23	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	a0002	284	97	3	27	53	4	10	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	1/0	a0003	284	71	26	16	14	3	11	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	a0004	284	7	7	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	a0005	284	3	3	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	a0006	284	1	0	0	1	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	a0007	284	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHOD1_chr16_67224389_67252481	1/1	a0001	1164	188	75	44	34	8	25	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0002	1164	9	2	2	5	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0003	1164	3	0	0	0	0	3	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0004	1164	2	0	0	2	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0005	1164	2	0	2	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0006	1164	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0007	1164	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0008	1164	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0009	1164	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0010	1164	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	a0011	1164	1	0	0	1	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD3_chr18_36292713_36785220	1/0	a0001	1622	71	24	14	23	2	7	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0002	1622	25	9	6	9	1	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0003	1622	22	13	1	6	0	2	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0004	1622	6	4	2	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0005	1622	6	4	1	0	0	1	copy fasta	FHOD3	chr18	36292713	36785220