JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FHOD3_chr18_36292713_36785220	0/1	a0006	1622	5	1	2	0	1	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0007	1622	4	3	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0008	1622	3	0	0	0	0	3	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0009	1622	3	0	0	2	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0010	1622	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0011	1622	2	0	2	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0012	1622	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0013	1622	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0014	1622	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0015	1622	2	1	0	1	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0016	1622	2	0	0	1	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0017	1622	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0018	1622	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0019	1622	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0020	1622	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0021	1622	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0022	1622	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0023	1622	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0024	1622	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	a0025	1622	1	0	0	0	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FH_chr1_241492603_241524755	1/1	a0001	510	395	90	64	189	12	38	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	a0002	510	6	0	0	6	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	a0003	510	4	4	0	0	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	a0004	510	1	0	0	1	0	0	copy fasta	FH	chr1	241492603	241524755
FIBCD1_chr9_130897440_130944247	1/1	a0001	461	369	90	71	149	16	41	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0002	461	3	3	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0003	461	2	0	2	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0004	461	2	1	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0005	5	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0006	461	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0007	461	1	0	0	0	0	1	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0008	461	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0009	461	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	a0010	461	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBIN_chr11_26989112_27002087	1/1	a0001	211	437	99	82	198	16	40	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	a0002	211	8	0	0	8	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	a0003	211	4	0	0	0	0	4	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	a0004	211	2	0	0	2	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	a0005	211	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBP_chr11_65878740_65893471	1/1	a0001	357	378	91	70	167	12	36	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	a0002	357	9	0	0	9	0	0	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	a0003	357	1	1	0	0	0	0	copy fasta	FIBP	chr11	65878740	65893471
FICD_chr12_108510277_108526210	1/1	a0001	458	435	90	69	210	16	48	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	a0002	458	6	5	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	a0003	458	4	0	0	4	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	a0004	458	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FIG4_chr6_109686296_109830426	1/1	a0001	907	190	22	44	97	7	18	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0002	907	127	66	14	32	3	12	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0003	907	38	0	7	28	0	3	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0004	907	11	0	1	5	0	5	copy fasta	FIG4	chr6	109686296	109830426