JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FIG4_chr6_109686296_109830426	0/0	a0005	907	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0006	319	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0007	907	1	0	1	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	a0008	907	1	0	1	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIGLA_chr2_70772310_70795643	0/0	a0001	219	352	76	49	184	11	32	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	1/1	a0002	219	85	16	23	21	7	16	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	a0003	219	1	0	0	1	0	0	copy fasta	FIGLA	chr2	70772310	70795643
FIGNL1_chr7_50439133_50455350	1/1	a0001	674	392	80	61	197	18	34	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0002	674	17	0	7	5	0	5	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0003	674	6	6	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0004	674	3	0	0	0	0	3	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0005	674	2	2	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0006	674	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0007	674	1	0	1	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0008	674	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	a0009	674	1	0	1	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL2_chr12_51812899_51853718	0/1	a0001	653	344	65	58	174	15	31	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	1/0	a0002	653	45	15	10	2	1	16	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0003	653	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0004	653	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0005	653	2	0	0	0	2	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0006	653	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0007	653	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0008	653	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0009	653	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0010	653	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0011	653	1	0	0	0	0	1	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	a0012	653	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGN_chr2_163597611_163741008	1/1	a0001	759	263	80	33	114	8	26	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	a0002	759	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	a0003	759	1	0	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	a0004	759	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FILIP1L_chr3_99823811_100119501	1/1	a0001	1190	167	55	30	51	7	22	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0002	1190	81	11	21	27	5	17	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0003	1190	3	3	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0004	1190	2	1	1	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0005	1190	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0006	1190	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0007	1190	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0008	1190	1	0	0	0	0	1	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	a0009	1190	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1_chr6_75303090_75498800	1/1	a0001	1213	283	61	41	140	10	29	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0002	1213	13	13	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0003	1213	3	1	2	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0004	1213	2	2	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0005	1213	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0006	1213	1	0	1	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0007	1213	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0008	1213	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	a0009	1213	1	0	0	0	0	1	copy fasta	FILIP1	chr6	75303090	75498800