JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FIP1L1_chr4_53372641_53465862	1/1	a0001	594	392	86	66	178	14	46	copy fasta	FIP1L1	chr4	53372641	53465862
FIRRM_chr1_169790040_169859080	1/1	a0001	853	385	82	61	188	13	39	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0002	853	15	0	5	5	2	3	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0003	853	10	10	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0004	853	6	0	0	6	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0005	853	1	0	0	0	1	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0006	853	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0007	853	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	a0008	853	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIS1_chr7_101234472_101250081	1/1	a0001	152	413	98	58	191	18	46	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	a0002	152	1	0	1	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	a0003	152	1	0	1	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	a0004	152	1	0	0	1	0	0	copy fasta	FIS1	chr7	101234472	101250081
FITM1_chr14_24125659_24137847	1/1	a0001	292	389	89	76	168	16	38	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	a0002	292	6	5	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	a0003	292	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM2_chr20_44297840_44316202	1/1	a0001	262	411	93	68	184	18	46	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	a0002	262	12	0	0	12	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	a0003	262	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FIZ1_chr19_55586376_55604517	0/1	a0001	496	302	84	62	105	11	39	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	1/0	a0002	496	120	12	19	79	3	6	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0003	496	3	3	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0004	496	2	0	2	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0005	496	1	0	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0006	496	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0007	496	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0008	496	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	a0009	496	1	0	0	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FJX1_chr11_35613460_35625865	1/1	a0001	437	427	65	83	221	14	42	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0002	437	25	25	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0003	437	4	4	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0004	437	2	2	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0005	437	1	0	0	1	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0006	433	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0007	437	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	a0008	437	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FKBP10_chr17_41808004_41828213	1/1	a0001	582	355	77	72	152	13	39	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	a0002	582	34	9	7	14	1	3	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	a0003	582	1	0	1	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	a0004	582	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	a0005	582	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP11_chr12_48916963_48930492	1/1	a0001	201	382	94	78	150	16	42	copy fasta	FKBP11	chr12	48916963	48930492
FKBP14_chr7_30005587_30031702	1/1	a0001	211	321	86	59	124	16	34	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	a0002	211	3	2	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	a0003	211	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	a0004	211	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP15_chr9_113156006_113226277	1/1	a0001	1219	186	34	26	111	4	9	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0002	1219	85	1	11	52	6	15	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0003	1219	44	2	9	26	1	6	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0004	1219	39	16	17	3	1	2	copy fasta	FKBP15	chr9	113156006	113226277