JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FKBP15_chr9_113156006_113226277	0/0	a0005	1220	12	4	1	6	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0006	1219	10	10	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0007	1219	6	6	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0008	1219	6	5	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0009	1219	5	0	3	0	2	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0010	1220	4	4	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0011	1220	3	3	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0012	1219	2	0	0	2	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0013	1219	2	0	0	2	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0014	1220	1	0	0	0	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0015	1220	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0016	1219	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0017	1219	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0018	1219	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	a0019	1219	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP1A_chr20_1363978_1398054	1/1	a0001	108	388	86	62	172	16	50	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1B_chr2_24044741_24068681	1/1	a0001	108	310	84	58	110	18	38	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP2_chr11_64236095_64249132	1/1	a0001	142	322	91	69	120	6	34	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	a0002	142	9	2	7	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	a0003	142	1	1	0	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP3_chr14_45110599_45139481	1/1	a0001	224	303	86	39	128	18	30	copy fasta	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	0/0	a0002	224	1	0	1	0	0	0	copy fasta	FKBP3	chr14	45110599	45139481
FKBP4_chr12_2789970_2810423	1/1	a0001	459	375	88	61	177	9	38	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	a0002	459	4	0	3	0	1	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	a0003	459	4	4	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	a0004	459	1	0	0	1	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	a0005	459	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	a0006	459	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP5_chr6_35568590_35693915	1/1	a0001	457	299	73	50	122	14	38	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	a0002	457	1	0	0	1	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	a0003	457	1	0	0	1	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	a0004	457	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP6_chr7_73323161_73363625	1/1	a0001	327	319	82	60	133	10	32	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	a0002	327	1	0	0	1	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP7_chr2_178458664_178483600	1/1	a0001	222	397	88	64	196	12	35	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	a0002	174	1	0	0	0	0	1	copy fasta	FKBP7	chr2	178458664	178483600
FKBP8_chr19_18526763_18548573	1/1	a0001	413	363	71	76	161	12	41	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	a0002	413	23	22	1	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	a0003	413	2	0	1	0	0	1	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	a0004	413	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	a0005	413	1	0	0	1	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP9_chr7_32952440_33011928	1/1	a0001	570	425	97	69	205	11	41	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	a0002	570	3	0	1	0	1	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	a0003	570	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	a0004	570	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBPL_chr6_32123707_32135288	0/1	a0001	349	375	71	72	179	15	37	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	a0002	349	35	15	4	3	3	10	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	a0003	353	7	0	5	1	0	1	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	a0004	349	4	1	0	3	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	a0005	349	3	0	3	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288