JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLG_chr1_152297165_152330239	0/0	a0082	4385	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0083	4385	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0084	2396	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0085	4385	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0086	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0087	4385	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0088	4061	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0089	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0090	4385	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0091	4385	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0092	4385	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0093	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0094	4385	1	0	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0095	4385	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0096	4061	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0097	4061	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0098	2743	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0099	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0100	4385	1	0	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0101	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0102	4385	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0103	3737	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0104	3737	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0105	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0106	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0107	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0108	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0109	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0110	4061	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0111	5034	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0112	5034	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0113	4385	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0114	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0115	4385	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0116	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0117	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0118	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0119	4385	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0120	4710	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0121	4710	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0122	1700	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0123	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0124	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0125	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0126	4710	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0127	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0128	4710	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0129	4386	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0130	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0131	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239