JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLG_chr1_152297165_152330239	0/0	a0132	4710	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0133	4710	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0134	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0135	4710	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0136	5359	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0137	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0138	4710	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0139	7304	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0140	4710	1	0	0	0	1	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0141	4386	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0142	4386	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0143	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0144	4710	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0145	4386	1	0	0	0	0	1	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0146	4386	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0147	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0148	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0149	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0150	4710	1	0	1	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0151	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0152	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0153	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0154	4710	1	0	0	1	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0155	4061	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0156	4061	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0157	4061	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0158	4710	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0159	4710	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0160	4710	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLG_chr1_152297165_152330239	0/0	a0161	4062	1	1	0	0	0	0	copy fasta	FLG	chr1	152297165	152330239
FLI1_chr11_128689072_128818267	1/1	a0001	452	322	83	57	140	6	34	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	a0002	452	5	0	1	4	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLI1_chr11_128689072_128818267	0/0	a0003	452	1	1	0	0	0	0	copy fasta	FLI1	chr11	128689072	128818267
FLII_chr17_18239815_18263738	1/1	a0001	1269	392	93	74	176	8	39	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0002	1269	3	0	1	0	2	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0003	1269	2	1	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0004	1269	2	0	1	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0005	1269	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0006	1269	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0007	1269	1	0	0	0	0	1	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0008	1269	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0009	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0010	1256	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0011	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0012	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0013	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0014	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0015	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0016	1269	1	1	0	0	0	0	copy fasta	FLII	chr17	18239815	18263738
FLII_chr17_18239815_18263738	0/0	a0017	1269	1	0	0	1	0	0	copy fasta	FLII	chr17	18239815	18263738