JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLNA_chrX_154343531_154379634	0/0	a0000	0	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	1/1	a0001	2647	242	61	51	94	9	25	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0002	2647	11	11	0	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0003	2647	2	0	0	2	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0004	2647	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0005	1404	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0006	2647	1	0	0	0	1	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0007	2647	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0008	2647	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0009	2647	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0010	1499	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0011	1611	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0012	2647	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0013	2566	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0014	2383	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0015	2647	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0016	1998	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0017	2647	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0018	1820	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0019	2647	1	0	0	0	1	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0020	874	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0021	817	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0022	2647	1	0	1	0	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0023	2647	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0024	497	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0025	2647	1	0	0	0	0	1	copy fasta	FLNA	chrX	154343531	154379634
FLNA_chrX_154343531_154379634	0/0	a0026	334	1	0	0	1	0	0	copy fasta	FLNA	chrX	154343531	154379634
FLNB_chr3_58003422_58177251	0/0	a0001	2602	70	26	15	16	3	10	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	1/1	a0002	2602	54	13	20	1	7	11	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0003	2602	12	5	0	6	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0004	2602	9	6	3	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0005	2602	8	8	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0006	2602	3	3	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0007	2602	2	2	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0008	2602	2	2	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0009	2602	2	0	1	0	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0010	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0011	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0012	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0013	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0014	2602	1	0	0	1	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0015	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0016	2602	1	0	0	1	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0017	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0018	2602	1	0	0	0	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0019	2602	1	0	1	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0020	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0021	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0022	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0023	2602	1	0	0	0	0	1	copy fasta	FLNB	chr3	58003422	58177251