JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLNB_chr3_58003422_58177251	0/0	a0024	2602	1	0	0	0	0	1	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0025	2602	1	0	0	1	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0026	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNB_chr3_58003422_58177251	0/0	a0027	2602	1	1	0	0	0	0	copy fasta	FLNB	chr3	58003422	58177251
FLNC_chr7_128825406_128864272	1/1	a0001	2725	302	87	53	116	14	30	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0002	2725	42	2	4	26	3	7	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0003	2725	12	0	0	10	0	2	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0004	2725	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0005	2725	3	3	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0006	2725	3	0	0	3	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0007	2725	2	0	2	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0008	2725	2	0	1	0	1	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0009	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0010	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0011	2725	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0012	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0013	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0014	2725	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0015	2725	1	0	0	0	0	1	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0016	2725	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0017	2725	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0018	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0019	2725	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0020	2725	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0021	2725	1	1	0	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0022	2725	1	0	1	0	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLNC_chr7_128825406_128864272	0/0	a0023	2725	1	0	0	1	0	0	copy fasta	FLNC	chr7	128825406	128864272
FLOT1_chr6_30722709_30747687	0/1	a0001	427	441	94	86	196	18	46	copy fasta	FLOT1	chr6	30722709	30747687
FLOT2_chr17_28874339_28902733	1/1	a0001	428	416	90	80	187	16	41	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	a0002	428	2	2	0	0	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	a0003	428	1	0	0	0	0	1	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	a0004	428	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	a0005	428	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLOT2_chr17_28874339_28902733	0/0	a0006	428	1	0	0	1	0	0	copy fasta	FLOT2	chr17	28874339	28902733
FLRT1_chr11_64030931_64124171	1/1	a0001	674	295	84	56	113	6	34	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	a0002	674	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	a0003	674	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	a0004	674	1	0	0	0	0	1	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	a0005	674	1	0	0	1	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT1_chr11_64030931_64124171	0/0	a0006	674	1	1	0	0	0	0	copy fasta	FLRT1	chr11	64030931	64124171
FLRT2_chr14_85525144_85659428	1/1	a0001	660	289	76	42	133	7	29	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	a0002	660	46	3	18	15	3	7	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	a0003	660	2	0	0	2	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT2_chr14_85525144_85659428	0/0	a0004	660	1	1	0	0	0	0	copy fasta	FLRT2	chr14	85525144	85659428
FLRT3_chr20_14317985_14342612	1/0	a0001	649	300	56	40	166	12	25	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/1	a0002	649	100	18	32	30	5	14	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	a0003	649	20	10	2	5	1	2	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	a0004	649	8	3	0	2	0	3	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	a0005	649	1	1	0	0	0	0	copy fasta	FLRT3	chr20	14317985	14342612
FLRT3_chr20_14317985_14342612	0/0	a0006	649	1	0	0	1	0	0	copy fasta	FLRT3	chr20	14317985	14342612