JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLT4_chr5_180596506_180654600	0/0	a0018	1363	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0019	1363	1	0	0	0	0	1	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0020	1363	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0021	1363	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0022	1363	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0023	1363	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0024	1363	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0025	1363	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0026	1363	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0027	1363	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0028	1363	1	0	1	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0029	1363	1	1	0	0	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0030	1363	1	0	0	1	0	0	copy fasta	FLT4	chr5	180596506	180654600
FLT4_chr5_180596506_180654600	0/0	a0031	1363	1	0	0	0	1	0	copy fasta	FLT4	chr5	180596506	180654600
FLVCR1_chr1_212853275_212904363	1/1	a0001	555	194	58	37	70	9	18	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	a0002	555	127	10	14	77	8	18	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	a0003	555	36	15	2	19	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	a0004	555	8	3	2	2	1	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR1_chr1_212853275_212904363	0/0	a0005	555	3	0	3	0	0	0	copy fasta	FLVCR1	chr1	212853275	212904363
FLVCR2_chr14_75573620_75653167	0/0	a0001	526	176	56	29	66	6	19	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	1/1	a0002	526	149	20	34	67	9	17	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0003	526	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0004	526	3	3	0	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0005	526	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0006	526	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0007	520	1	0	1	0	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0008	526	1	0	0	0	1	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLVCR2_chr14_75573620_75653167	0/0	a0009	526	1	0	0	1	0	0	copy fasta	FLVCR2	chr14	75573620	75653167
FLYWCH1_chr16_2906931_2956208	1/1	a0001	716	372	77	77	163	18	35	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0002	716	7	0	0	7	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0003	716	5	5	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0004	716	5	5	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0005	716	3	0	1	2	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0006	716	3	0	0	0	0	3	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0007	716	3	2	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0008	716	2	2	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0009	716	2	0	2	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0010	716	2	0	0	0	0	2	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0011	716	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0012	210	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0013	716	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0014	716	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0015	716	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0016	716	1	0	1	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0017	716	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0018	716	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0019	716	1	0	0	0	0	1	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0020	716	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0021	716	1	0	0	1	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208
FLYWCH1_chr16_2906931_2956208	0/0	a0022	716	1	1	0	0	0	0	copy fasta	FLYWCH1	chr16	2906931	2956208