JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FLYWCH2_chr16_2878215_2904365	1/1	a0001	140	382	80	78	166	18	38	copy fasta	FLYWCH2	chr16	2878215	2904365
FLYWCH2_chr16_2878215_2904365	0/0	a0002	140	8	8	0	0	0	0	copy fasta	FLYWCH2	chr16	2878215	2904365
FMC1_chr7_139336337_139351328	1/1	a0001	113	239	11	55	132	9	30	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	a0002	113	172	85	21	47	7	12	copy fasta	FMC1	chr7	139336337	139351328
FMC1_chr7_139336337_139351328	0/0	a0003	113	1	0	0	1	0	0	copy fasta	FMC1	chr7	139336337	139351328
FMN1_chr15_32760544_33199714	1/0	a0001	1419	45	16	2	22	1	3	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0002	1419	17	11	2	2	1	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0003	1419	16	1	4	9	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0004	1419	11	1	5	2	0	3	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0005	1419	10	5	2	0	3	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0006	1419	9	1	3	0	3	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0007	1419	8	2	2	3	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0008	1419	7	7	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0009	1419	3	0	1	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0010	1419	3	0	0	3	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0011	1419	3	0	1	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0012	1419	3	2	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0013	1419	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0014	1419	2	0	2	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/1	a0015	1419	2	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0016	1419	2	0	0	1	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0017	1419	2	0	0	0	0	2	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0018	1419	2	0	1	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0019	1419	2	0	0	2	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0020	1419	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0021	1419	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0022	1418	2	0	1	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0023	1419	2	2	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0024	1419	2	1	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0025	1419	2	1	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0026	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0027	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0028	1418	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0029	1419	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0030	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0031	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0032	1419	1	0	0	0	1	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0033	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0034	1419	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0035	1419	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0036	1419	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0037	1419	1	0	1	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0038	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0039	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0040	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0041	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0042	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0043	1419	1	0	0	0	0	1	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0044	1419	1	0	0	1	0	0	copy fasta	FMN1	chr15	32760544	33199714
FMN1_chr15_32760544_33199714	0/0	a0045	1419	1	1	0	0	0	0	copy fasta	FMN1	chr15	32760544	33199714