JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FMN2_chr1_240086883_240480187	0/0	a0036	1699	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0037	1688	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0038	1798	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0039	1710	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0040	1776	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0041	1732	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0042	1754	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0043	1787	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0044	1699	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0045	1853	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0046	1765	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0047	1787	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0048	1765	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0049	1721	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0050	1754	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0051	1732	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0052	1732	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0053	1732	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0054	1721	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0055	1732	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0056	1710	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0057	1710	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0058	1677	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0059	1764	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0060	1239	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0061	1250	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0062	1283	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0063	1261	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0064	1316	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0065	1294	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0066	1293	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0067	1250	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0068	1294	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0069	1294	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0070	1250	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0071	1699	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0072	1732	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0073	1765	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0074	1799	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0075	1765	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0076	1766	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0077	1807	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0078	1722	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0079	1799	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0080	1766	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0081	1777	1	0	0	0	1	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0082	1711	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0083	1612	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0084	1722	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0085	1755	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187