JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FMN2_chr1_240086883_240480187	0/0	a0086	1733	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0087	1766	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0088	1766	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0089	1733	1	0	0	0	0	1	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0090	1722	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0091	1777	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0092	1691	1	1	0	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0093	1251	1	0	0	1	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0094	1295	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMN2_chr1_240086883_240480187	0/0	a0095	1722	1	0	1	0	0	0	copy fasta	FMN2	chr1	240086883	240480187
FMNL1_chr17_45216885_45252318	0/0	a0001	1100	243	34	54	114	10	31	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/1	a0002	1099	97	44	16	31	2	3	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0003	1101	12	7	2	0	2	1	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0004	1098	7	0	0	7	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0005	1099	4	0	0	4	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0006	1097	4	0	1	3	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0007	1100	3	0	0	3	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0008	1099	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0009	1100	2	0	0	0	0	2	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0010	1099	2	2	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0011	1099	2	0	2	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0012	1100	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0013	1100	1	0	0	1	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0014	1099	1	1	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0015	1100	1	0	1	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	0/0	a0016	1100	1	0	0	0	0	1	copy fasta	FMNL1	chr17	45216885	45252318
FMNL1_chr17_45216885_45252318	1/0	a0017	1100	1	0	0	0	0	0	copy fasta	FMNL1	chr17	45216885	45252318
FMNL2_chr2_152330174_152654826	0/1	a0001	1093	105	30	25	26	7	16	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0002	580	63	21	20	10	0	12	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0003	1093	10	10	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0004	580	10	10	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	1/0	a0005	1092	4	1	0	1	1	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0006	1093	2	1	1	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0007	1093	2	2	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0008	580	2	0	2	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0009	1093	1	0	0	1	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL2_chr2_152330174_152654826	0/0	a0010	1093	1	1	0	0	0	0	copy fasta	FMNL2	chr2	152330174	152654826
FMNL3_chr12_49631499_49712405	1/1	a0001	1027	148	78	20	30	6	12	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	a0002	1027	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMNL3_chr12_49631499_49712405	0/0	a0003	1027	1	1	0	0	0	0	copy fasta	FMNL3	chr12	49631499	49712405
FMO1_chr1_171243494_171290961	1/1	a0001	532	278	68	50	114	6	38	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0002	532	21	19	0	2	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0003	532	3	3	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0004	532	3	3	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0005	532	2	2	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0006	532	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0007	452	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0008	532	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0009	532	1	1	0	0	0	0	copy fasta	FMO1	chr1	171243494	171290961
FMO1_chr1_171243494_171290961	0/0	a0010	532	1	0	0	1	0	0	copy fasta	FMO1	chr1	171243494	171290961