JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FMO2_chr1_171180300_171217686	0/1	a0001	471	108	12	18	61	5	11	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0002	471	73	4	10	45	2	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0003	471	49	1	7	28	1	12	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0004	471	44	12	9	22	1	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0005	471	36	17	7	7	2	3	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0006	113	24	18	3	1	2	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	1/0	a0007	535	11	10	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0008	535	4	4	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0009	471	4	4	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0010	471	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0011	471	3	3	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0012	471	3	0	2	0	1	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0013	535	2	2	0	0	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0014	471	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO2_chr1_171180300_171217686	0/0	a0015	471	1	0	0	1	0	0	copy fasta	FMO2	chr1	171180300	171217686
FMO3_chr1_171085905_171122819	1/1	a0001	532	210	30	46	110	4	18	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0002	532	76	38	14	8	5	11	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0003	532	52	3	9	35	0	5	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0004	532	42	3	6	28	4	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0005	532	7	7	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0006	532	5	5	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0007	532	3	2	1	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0008	532	2	0	0	2	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0009	532	1	0	0	1	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0010	532	1	1	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0011	532	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0012	532	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0013	532	1	0	0	0	0	1	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0014	532	1	0	0	0	1	0	copy fasta	FMO3	chr1	171085905	171122819
FMO3_chr1_171085905_171122819	0/0	a0015	532	1	1	0	0	0	0	copy fasta	FMO3	chr1	171085905	171122819
FMO4_chr1_171309183_171347084	1/1	a0001	558	349	65	63	167	11	41	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0002	558	26	24	2	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0003	558	2	1	0	0	1	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0004	558	1	0	0	0	0	1	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0005	558	1	0	1	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0006	558	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0007	558	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0008	558	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0009	558	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0010	550	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0011	558	1	1	0	0	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO4_chr1_171309183_171347084	0/0	a0012	558	1	0	0	1	0	0	copy fasta	FMO4	chr1	171309183	171347084
FMO5_chr1_147181261_147230339	0/0	a0001	533	402	84	74	188	18	38	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	a0002	408	2	2	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	a0003	533	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMO5_chr1_147181261_147230339	0/0	a0004	533	1	1	0	0	0	0	copy fasta	FMO5	chr1	147181261	147230339
FMOD_chr1_203335628_203356122	1/1	a0001	376	467	96	76	229	16	48	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0002	376	2	0	0	2	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0003	376	1	1	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0004	376	1	1	0	0	0	0	copy fasta	FMOD	chr1	203335628	203356122