JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FMOD_chr1_203335628_203356122	0/0	a0005	376	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0006	376	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0007	376	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0008	376	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMOD_chr1_203335628_203356122	0/0	a0009	376	1	0	0	1	0	0	copy fasta	FMOD	chr1	203335628	203356122
FMR1NB_chrX_147976337_148031665	0/0	a0000	0	1	0	1	0	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/1	a0001	255	143	27	21	81	3	10	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	1/0	a0002	255	130	50	27	26	10	16	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1NB_chrX_147976337_148031665	0/0	a0003	12	1	0	0	1	0	0	copy fasta	FMR1NB	chrX	147976337	148031665
FMR1_chrX_147906919_147956125	1/1	a0001	632	294	71	51	125	13	32	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	a0002	632	7	7	0	0	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	a0003	302	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	a0004	318	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FMR1_chrX_147906919_147956125	0/0	a0005	112	1	0	0	1	0	0	copy fasta	FMR1	chrX	147906919	147956125
FN1_chr2_215355865_215441068	0/1	a0001	2477	150	56	44	20	10	19	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0002	2477	47	7	16	9	4	11	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0003	2477	11	11	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0004	2477	4	4	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0005	2477	3	3	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0006	2477	3	3	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0007	2477	3	2	1	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0008	2477	3	0	2	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0009	2477	3	0	3	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0010	2477	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0011	2477	2	2	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0012	2477	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0013	2477	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0014	2477	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0015	2477	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0016	2477	1	0	0	1	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0017	2477	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0018	2477	1	1	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	0/0	a0019	2477	1	0	0	0	0	1	copy fasta	FN1	chr2	215355865	215441068
FN1_chr2_215355865_215441068	1/0	a0020	2477	1	0	0	0	0	0	copy fasta	FN1	chr2	215355865	215441068
FN3KRP_chr17_82711706_82733013	1/1	a0001	309	399	95	71	170	17	44	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0002	309	11	0	11	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0003	309	5	0	0	5	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0004	309	4	0	0	4	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0005	309	2	2	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0006	309	1	0	0	0	1	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0007	309	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0008	309	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0009	309	1	1	0	0	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3KRP_chr17_82711706_82733013	0/0	a0010	309	1	0	0	1	0	0	copy fasta	FN3KRP	chr17	82711706	82733013
FN3K_chr17_82730615_82756196	1/1	a0001	309	399	92	76	168	16	45	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	a0002	309	2	2	0	0	0	0	copy fasta	FN3K	chr17	82730615	82756196
FN3K_chr17_82730615_82756196	0/0	a0003	259	1	0	0	0	0	1	copy fasta	FN3K	chr17	82730615	82756196
FNBP1L_chr1_93443118_93559661	1/1	a0001	605	320	79	66	127	12	34	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	a0002	605	2	0	0	2	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1L_chr1_93443118_93559661	0/0	a0003	605	1	0	0	1	0	0	copy fasta	FNBP1L	chr1	93443118	93559661