JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FNBP1L_chr1_93443118_93559661	0/0	a0004	605	1	1	0	0	0	0	copy fasta	FNBP1L	chr1	93443118	93559661
FNBP1_chr9_129882187_130048189	0/1	a0001	617	116	39	21	30	5	20	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	1/0	a0002	617	87	19	23	26	6	12	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	a0003	617	7	7	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	a0004	617	1	1	0	0	0	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP1_chr9_129882187_130048189	0/0	a0005	617	1	0	0	0	1	0	copy fasta	FNBP1	chr9	129882187	130048189
FNBP4_chr11_47711494_47772341	1/1	a0001	1017	233	73	36	94	6	22	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0002	1015	83	8	19	33	4	19	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0003	1015	12	0	8	0	2	2	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0004	1015	8	0	0	8	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0005	1015	3	0	1	2	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0006	1015	2	0	0	0	2	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0007	1017	2	2	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0008	1015	1	0	0	0	0	1	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0009	1015	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0010	1017	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0011	1017	1	1	0	0	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0012	1017	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0013	1017	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNBP4_chr11_47711494_47772341	0/0	a0014	1017	1	0	0	1	0	0	copy fasta	FNBP4	chr11	47711494	47772341
FNDC10_chr1_1593012_1605135	1/1	a0001	226	405	98	78	171	14	42	copy fasta	FNDC10	chr1	1593012	1605135
FNDC10_chr1_1593012_1605135	0/0	a0002	226	1	0	0	1	0	0	copy fasta	FNDC10	chr1	1593012	1605135
FNDC11_chr20_63549159_63561695	1/1	a0001	318	409	95	81	167	18	46	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0002	318	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0003	318	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0004	318	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0005	318	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0006	318	1	0	1	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0007	318	1	1	0	0	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC11_chr20_63549159_63561695	0/0	a0008	318	1	0	0	1	0	0	copy fasta	FNDC11	chr20	63549159	63561695
FNDC1_chr6_159164400_159277108	0/0	a0001	1888	50	11	10	11	6	12	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0002	1888	44	10	6	23	0	5	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0003	1888	44	9	15	12	3	5	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0004	1888	40	10	2	21	2	5	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/1	a0005	1894	39	15	2	20	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0006	1894	18	3	2	11	0	2	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0007	1894	8	0	7	0	1	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0008	1894	8	3	0	2	0	3	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0009	1888	5	4	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0010	1894	4	4	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0011	1888	4	4	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0012	1894	4	0	4	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0013	1894	2	0	0	2	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0014	1894	2	0	0	1	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0015	1888	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0016	1888	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0017	1888	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0018	1888	2	0	2	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0019	1888	2	2	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0020	1894	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108