JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FNDC1_chr6_159164400_159277108	0/0	a0021	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0022	1888	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0023	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0024	1894	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0025	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0026	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0027	1888	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0028	1894	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0029	1894	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0030	1894	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	1/0	a0031	1894	1	0	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0032	1888	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0033	1888	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0034	1888	1	0	0	1	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0035	1888	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0036	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0037	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0038	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0039	1888	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0040	1894	1	0	1	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0041	1888	1	0	0	0	0	1	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0042	1894	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC1_chr6_159164400_159277108	0/0	a0043	1888	1	1	0	0	0	0	copy fasta	FNDC1	chr6	159164400	159277108
FNDC3A_chr13_48970912_49214779	1/1	a0001	1198	277	68	46	125	6	30	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0002	1198	6	6	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0003	1198	5	0	0	0	4	1	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0004	1198	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0005	1198	1	0	0	0	0	1	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0006	1198	1	1	0	0	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3A_chr13_48970912_49214779	0/0	a0007	1198	1	0	0	1	0	0	copy fasta	FNDC3A	chr13	48970912	49214779
FNDC3B_chr3_172034578_172406669	0/1	a0001	1204	128	56	17	32	9	13	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	1/0	a0002	1204	57	8	11	24	5	8	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	a0003	1204	5	5	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	a0004	1204	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	a0005	1204	2	2	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	a0006	1204	1	1	0	0	0	0	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC3B_chr3_172034578_172406669	0/0	a0007	1204	1	0	0	0	0	1	copy fasta	FNDC3B	chr3	172034578	172406669
FNDC4_chr2_27486883_27500200	1/1	a0001	234	304	84	66	102	16	34	copy fasta	FNDC4	chr2	27486883	27500200
FNDC4_chr2_27486883_27500200	0/0	a0002	234	8	0	0	8	0	0	copy fasta	FNDC4	chr2	27486883	27500200
FNDC5_chr1_32857268_32875912	1/1	a0001	28	414	98	72	180	16	46	copy fasta	FNDC5	chr1	32857268	32875912
FNDC7_chr1_108707908_108747749	0/0	a0001	733	108	4	23	70	2	9	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0002	733	66	18	18	9	6	15	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/1	a0003	733	49	1	12	22	6	7	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	1/0	a0004	733	44	16	2	22	2	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0005	733	39	9	8	17	0	5	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0006	733	12	10	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0007	733	8	8	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0008	733	7	0	1	1	0	5	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0009	733	4	4	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0010	733	4	3	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749