JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FNDC7_chr1_108707908_108747749	0/0	a0011	733	4	4	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0012	733	4	4	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0013	733	3	3	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0014	733	2	1	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0015	733	2	0	0	2	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0016	733	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0017	733	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0018	733	2	0	2	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0019	733	2	2	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0020	733	2	0	1	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0021	733	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0022	733	1	0	0	0	0	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0023	733	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0024	733	1	0	0	1	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0025	733	1	0	1	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0026	733	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0027	733	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0028	733	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0029	733	1	0	0	0	0	1	copy fasta	FNDC7	chr1	108707908	108747749
FNDC7_chr1_108707908_108747749	0/0	a0030	733	1	1	0	0	0	0	copy fasta	FNDC7	chr1	108707908	108747749
FNDC8_chr17_35116615_35135732	0/0	a0001	324	353	81	59	165	10	38	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	1/1	a0002	324	55	11	15	17	2	8	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	a0003	324	5	5	0	0	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	a0004	324	2	1	0	1	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC8_chr17_35116615_35135732	0/0	a0005	324	1	0	0	1	0	0	copy fasta	FNDC8	chr17	35116615	35135732
FNDC9_chr5_157336598_157350677	1/1	a0001	224	284	43	58	131	14	36	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0002	224	78	48	15	3	4	8	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0003	224	6	0	2	4	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0004	224	4	4	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0005	224	2	2	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0006	224	1	1	0	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0007	224	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0008	224	1	0	1	0	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNDC9_chr5_157336598_157350677	0/0	a0009	224	1	0	0	1	0	0	copy fasta	FNDC9	chr5	157336598	157350677
FNIP1_chr5_131636714_131802017	0/1	a0001	1166	254	67	53	116	3	14	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0002	1166	53	6	11	27	1	8	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0003	1166	10	10	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0004	1166	3	3	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0005	1166	2	2	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0006	1166	2	0	0	0	0	2	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0007	1166	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0008	1166	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	0/0	a0009	1166	1	0	0	1	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP1_chr5_131636714_131802017	1/0	a0010	1166	1	0	0	0	0	0	copy fasta	FNIP1	chr5	131636714	131802017
FNIP2_chr4_158764026_158913050	1/1	a0001	1114	195	62	40	58	7	26	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0002	1114	37	9	3	20	1	4	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0003	1114	10	10	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0004	1114	5	0	4	0	1	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0005	1114	1	0	0	0	0	1	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0006	1114	1	0	0	0	0	1	copy fasta	FNIP2	chr4	158764026	158913050