JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FNIP2_chr4_158764026_158913050	0/0	a0007	1114	1	0	1	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0008	1114	1	0	0	0	1	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0009	1114	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0010	1114	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNIP2_chr4_158764026_158913050	0/0	a0011	1114	1	1	0	0	0	0	copy fasta	FNIP2	chr4	158764026	158913050
FNTA_chr8_43051323_43090785	1/1	a0001	379	293	87	54	100	16	34	copy fasta	FNTA	chr8	43051323	43090785
FNTA_chr8_43051323_43090785	0/0	a0002	379	1	1	0	0	0	0	copy fasta	FNTA	chr8	43051323	43090785
FNTB_chr14_64981895_65067650	1/1	a0001	437	357	86	66	153	10	40	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	a0002	437	1	0	0	1	0	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	a0003	437	1	1	0	0	0	0	copy fasta	FNTB	chr14	64981895	65067650
FNTB_chr14_64981895_65067650	0/0	a0004	437	1	1	0	0	0	0	copy fasta	FNTB	chr14	64981895	65067650
FOCAD_chr9_20679259_21000950	0/0	a0001	1801	98	30	11	47	3	7	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0002	1801	87	17	13	45	5	7	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/1	a0003	1801	58	14	10	20	2	11	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	1/0	a0004	1801	14	6	4	3	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0005	1801	10	8	1	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0006	1801	7	7	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0007	1801	6	0	0	5	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0008	1801	5	0	0	5	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0009	1801	3	0	3	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0010	1801	2	0	2	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0011	1801	2	0	1	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0012	1801	2	0	0	2	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0013	1801	2	0	0	0	0	2	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0014	1801	2	0	0	0	2	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0015	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0016	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0017	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0018	1801	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0019	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0020	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0021	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0022	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0023	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0024	1801	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0025	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0026	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0027	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0028	1801	1	0	0	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0029	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0030	1801	1	0	0	1	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0031	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0032	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0033	1801	1	0	0	0	0	1	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0034	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0035	1801	1	0	1	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOCAD_chr9_20679259_21000950	0/0	a0036	1801	1	1	0	0	0	0	copy fasta	FOCAD	chr9	20679259	21000950
FOLH1_chr11_49140092_49213602	1/0	a0001	750	195	35	39	92	11	17	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/1	a0002	750	166	50	21	74	5	15	copy fasta	FOLH1	chr11	49140092	49213602
FOLH1_chr11_49140092_49213602	0/0	a0003	749	6	5	1	0	0	0	copy fasta	FOLH1	chr11	49140092	49213602