JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXB1_chr15_59999311_60012444	0/0	a0004	325	1	0	0	1	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB1_chr15_59999311_60012444	0/0	a0005	325	1	0	1	0	0	0	copy fasta	FOXB1	chr15	59999311	60012444
FOXB2_chr9_77014655_77025953	1/1	a0001	432	393	90	78	167	14	42	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	a0002	432	4	0	0	0	0	4	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	a0003	428	1	0	0	1	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	a0004	432	1	1	0	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXB2_chr9_77014655_77025953	0/0	a0005	432	1	1	0	0	0	0	copy fasta	FOXB2	chr9	77014655	77025953
FOXC1_chr6_1604915_1618897	1/0	a0001	553	161	42	37	53	11	17	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	a0002	555	122	9	30	74	2	7	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/1	a0003	554	71	4	2	53	0	11	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	a0004	554	61	32	9	6	3	11	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	a0005	553	9	7	2	0	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	a0006	553	3	0	0	3	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC1_chr6_1604915_1618897	0/0	a0007	553	1	0	0	1	0	0	copy fasta	FOXC1	chr6	1604915	1618897
FOXC2_chr16_86561829_86574728	1/1	a0001	501	447	90	84	207	14	50	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0002	501	4	4	0	0	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0003	501	3	0	0	3	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0004	501	2	0	0	2	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0005	501	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0006	501	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0007	501	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXC2_chr16_86561829_86574728	0/0	a0008	501	1	0	0	1	0	0	copy fasta	FOXC2	chr16	86561829	86574728
FOXD1_chr5_73441266_73453777	1/1	a0001	465	327	33	52	181	12	47	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0002	465	62	55	7	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0003	467	7	6	1	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0004	460	6	0	4	0	1	1	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0005	465	5	0	0	5	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0006	465	4	0	3	0	1	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0007	465	2	2	0	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD1_chr5_73441266_73453777	0/0	a0008	465	1	0	1	0	0	0	copy fasta	FOXD1	chr5	73441266	73453777
FOXD2_chr1_47433044_47445691	0/0	a0001	497	343	83	70	142	12	36	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/1	a0002	497	60	3	4	40	2	10	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0003	495	4	2	1	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0004	497	3	0	0	3	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0005	497	2	0	0	0	0	2	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	1/0	a0006	495	1	0	0	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0007	497	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0008	497	1	0	1	0	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD2_chr1_47433044_47445691	0/0	a0009	497	1	0	0	1	0	0	copy fasta	FOXD2	chr1	47433044	47445691
FOXD3_chr1_63317567_63330128	1/1	a0001	478	399	81	81	184	18	33	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0002	478	51	12	1	29	0	9	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0003	478	2	0	0	2	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0004	478	1	0	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0005	478	1	0	1	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0006	478	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0007	478	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0008	478	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0009	123	1	0	0	1	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0010	478	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128
FOXD3_chr1_63317567_63330128	0/0	a0011	474	1	1	0	0	0	0	copy fasta	FOXD3	chr1	63317567	63330128