JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXD4L1_chr2_113493665_113506150	0/0	a0000	0	101	13	23	51	3	11	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	1/1	a0001	408	183	52	39	53	10	27	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0002	408	20	20	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0003	408	13	0	3	7	1	2	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0004	408	3	0	0	0	0	3	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0005	417	1	0	0	1	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0006	408	1	0	1	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0007	408	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0008	408	1	0	0	0	0	1	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0009	408	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L1_chr2_113493665_113506150	0/0	a0010	408	1	1	0	0	0	0	copy fasta	FOXD4L1	chr2	113493665	113506150
FOXD4L3_chr9_68297867_68310084	0/0	a0001	107	83	25	18	29	1	10	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	1/0	a0002	417	48	9	3	26	4	5	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0003	417	28	5	5	15	0	3	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0004	259	9	1	2	2	1	3	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0005	417	4	0	2	2	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0006	259	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0007	107	1	0	0	0	0	1	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L3_chr9_68297867_68310084	0/0	a0008	417	1	1	0	0	0	0	copy fasta	FOXD4L3	chr9	68297867	68310084
FOXD4L4_chr9_65732146_65743396	0/0	a0001	416	73	15	11	36	5	6	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	1/0	a0002	416	59	22	5	28	2	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0003	416	33	7	5	17	1	3	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0004	416	12	0	1	9	0	2	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0005	415	7	0	3	4	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0006	416	6	0	0	6	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0007	416	4	0	0	4	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0008	416	2	2	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0009	417	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0010	416	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0011	405	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0012	416	1	0	0	1	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0013	417	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0014	416	1	0	1	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0015	416	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0016	416	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0017	416	1	0	0	1	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0018	416	1	1	0	0	0	0	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L4_chr9_65732146_65743396	0/0	a0019	416	1	0	0	0	0	1	copy fasta	FOXD4L4	chr9	65732146	65743396
FOXD4L5_chr9_65277101_65290209	0/0	a0000	0	55	27	3	15	3	7	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	a0001	416	13	4	2	5	1	1	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	1/0	a0002	416	7	5	1	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	a0003	416	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L5_chr9_65277101_65290209	0/0	a0004	416	3	3	0	0	0	0	copy fasta	FOXD4L5	chr9	65277101	65290209
FOXD4L6_chr9_41121435_41133681	0/1	a0001	417	257	49	48	126	10	23	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0002	417	53	23	6	16	0	8	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0003	417	3	2	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0004	417	2	0	0	0	0	2	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0005	417	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0006	417	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0007	417	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681