JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXD4L6_chr9_41121435_41133681	0/0	a0008	362	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0009	417	1	0	1	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0010	417	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0011	417	1	0	0	0	0	1	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0012	417	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0013	417	1	1	0	0	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4L6_chr9_41121435_41133681	0/0	a0014	417	1	0	0	1	0	0	copy fasta	FOXD4L6	chr9	41121435	41133681
FOXD4_chr9_111231_123417	0/0	a0000	0	109	5	15	77	1	11	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	1/1	a0001	439	183	13	32	104	9	23	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0002	439	74	18	23	24	1	8	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0003	439	26	17	3	4	0	2	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0004	439	9	7	0	2	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0005	424	8	3	0	2	0	3	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0006	439	8	6	2	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0007	439	4	4	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0008	439	4	0	1	0	1	2	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0009	439	4	3	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0010	439	3	3	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0011	424	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0012	439	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0013	439	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0014	424	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0015	439	2	2	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0016	439	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0017	439	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0018	439	1	0	0	0	0	1	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0019	439	1	0	0	1	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0020	439	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0021	439	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0022	439	1	1	0	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0023	424	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0024	439	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXD4_chr9_111231_123417	0/0	a0025	439	1	0	1	0	0	0	copy fasta	FOXD4	chr9	111231	123417
FOXE1_chr9_97848226_97861717	0/0	a0001	371	254	56	44	114	13	27	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	1/1	a0002	373	59	12	25	4	2	14	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	a0003	371	4	4	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	a0004	369	4	0	2	0	1	1	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	a0005	376	3	0	1	0	0	2	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	a0006	371	3	1	2	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE1_chr9_97848226_97861717	0/0	a0007	371	1	1	0	0	0	0	copy fasta	FOXE1	chr9	97848226	97861717
FOXE3_chr1_47411285_47423052	1/1	a0001	319	408	89	72	187	12	46	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0002	319	6	6	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0003	319	3	0	0	3	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0004	319	3	3	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0005	319	2	0	2	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0006	319	2	0	2	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0007	319	2	2	0	0	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0008	319	1	0	0	0	1	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0009	319	1	0	0	0	1	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXE3_chr1_47411285_47423052	0/0	a0010	319	1	0	0	1	0	0	copy fasta	FOXE3	chr1	47411285	47423052