JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXE3_chr1_47411285_47423052	0/0	a0011	319	1	0	0	1	0	0	copy fasta	FOXE3	chr1	47411285	47423052
FOXF1_chr16_86505527_86520422	1/1	a0001	379	425	90	78	191	16	48	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	a0002	379	7	0	0	7	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	a0003	379	3	3	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF1_chr16_86505527_86520422	0/0	a0004	379	1	1	0	0	0	0	copy fasta	FOXF1	chr16	86505527	86520422
FOXF2_chr6_1384576_1400603	0/1	a0001	445	312	67	41	161	8	34	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	1/0	a0002	444	88	26	35	12	8	6	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0003	446	29	1	3	24	0	1	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0004	445	11	0	2	6	0	3	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0005	445	2	1	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0006	445	2	0	0	2	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0007	449	1	0	1	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0008	445	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0009	445	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0010	401	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0011	444	1	1	0	0	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXF2_chr6_1384576_1400603	0/0	a0012	445	1	0	0	1	0	0	copy fasta	FOXF2	chr6	1384576	1400603
FOXG1_chr14_28761787_28775277	1/1	a0001	489	418	86	82	190	14	44	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	a0002	490	3	3	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXG1_chr14_28761787_28775277	0/0	a0003	489	1	1	0	0	0	0	copy fasta	FOXG1	chr14	28761787	28775277
FOXH1_chr8_144468412_144480849	1/1	a0001	365	370	82	69	169	10	38	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	a0002	365	12	11	1	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	a0003	365	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	a0004	365	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	a0005	365	1	1	0	0	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXH1_chr8_144468412_144480849	0/0	a0006	365	1	0	0	1	0	0	copy fasta	FOXH1	chr8	144468412	144480849
FOXI1_chr5_170100897_170114734	1/1	a0001	378	408	89	76	187	15	39	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	a0002	378	1	1	0	0	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	a0003	378	1	0	0	0	1	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	a0004	378	1	0	0	1	0	0	copy fasta	FOXI1	chr5	170100897	170114734
FOXI1_chr5_170100897_170114734	0/0	a0005	378	1	0	0	0	0	1	copy fasta	FOXI1	chr5	170100897	170114734
FOXI2_chr10_127732185_127746183	1/1	a0001	318	417	97	78	184	12	44	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	a0002	319	12	0	4	6	0	2	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	a0003	318	3	3	0	0	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	a0004	318	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI2_chr10_127732185_127746183	0/0	a0005	318	1	0	0	1	0	0	copy fasta	FOXI2	chr10	127732185	127746183
FOXI3_chr2_88441787_88457693	1/1	a0001	420	409	99	73	173	15	47	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	a0002	420	1	0	0	0	1	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	a0003	420	1	0	0	1	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	a0004	420	1	1	0	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	a0005	420	1	0	0	0	0	1	copy fasta	FOXI3	chr2	88441787	88457693
FOXI3_chr2_88441787_88457693	0/0	a0006	420	1	0	1	0	0	0	copy fasta	FOXI3	chr2	88441787	88457693
FOXJ1_chr17_76131333_76146245	1/1	a0001	421	370	91	69	148	14	46	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0002	421	3	0	0	3	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0003	421	2	2	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0004	421	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0005	421	1	0	1	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0006	421	1	1	0	0	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0007	421	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245
FOXJ1_chr17_76131333_76146245	0/0	a0008	421	1	0	0	1	0	0	copy fasta	FOXJ1	chr17	76131333	76146245