JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXJ2_chr12_8027716_8060517	1/1	a0001	574	367	91	75	139	16	44	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	a0002	574	2	2	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	a0003	574	2	0	0	2	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	a0004	518	1	1	0	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	a0005	574	1	0	0	1	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ2_chr12_8027716_8060517	0/0	a0006	579	1	0	1	0	0	0	copy fasta	FOXJ2	chr12	8027716	8060517
FOXJ3_chr1_42171548_42340235	0/1	a0001	622	238	53	46	108	3	27	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	1/0	a0002	622	79	18	10	35	4	11	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0003	622	6	3	1	0	1	1	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0004	622	4	4	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0005	622	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0006	622	1	1	0	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0007	622	1	0	0	0	0	1	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0008	622	1	0	0	1	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXJ3_chr1_42171548_42340235	0/0	a0009	622	1	0	1	0	0	0	copy fasta	FOXJ3	chr1	42171548	42340235
FOXK1_chr7_4677295_4776442	1/1	a0001	733	283	89	50	95	9	38	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	a0002	733	5	3	1	0	1	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	a0003	733	2	0	2	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	a0004	733	2	2	0	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	a0005	733	1	0	1	0	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK1_chr7_4677295_4776442	0/0	a0006	733	1	0	0	1	0	0	copy fasta	FOXK1	chr7	4677295	4776442
FOXK2_chr17_82514732_82609602	1/1	a0001	660	257	70	57	77	10	41	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0002	655	25	6	9	4	2	4	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0003	660	5	1	4	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0004	660	3	2	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0005	660	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0006	660	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0007	660	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0008	621	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0009	556	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0010	558	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0011	558	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0012	637	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0013	589	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0014	556	1	0	1	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0015	676	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0016	660	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0017	660	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0018	660	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0019	660	1	1	0	0	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0020	660	1	0	0	0	0	1	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0021	676	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXK2_chr17_82514732_82609602	0/0	a0022	551	1	0	0	1	0	0	copy fasta	FOXK2	chr17	82514732	82609602
FOXL1_chr16_86573549_86588478	0/0	a0001	345	451	89	82	219	16	45	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0002	345	2	0	0	0	0	2	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0003	345	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0004	345	1	0	0	1	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0005	345	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0006	345	1	1	0	0	0	0	copy fasta	FOXL1	chr16	86573549	86588478
FOXL1_chr16_86573549_86588478	0/0	a0007	340	1	0	0	0	0	1	copy fasta	FOXL1	chr16	86573549	86588478