JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXN2_chr2_48309682_48384295	1/1	a0001	431	341	80	60	141	14	44	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	a0002	431	1	0	0	1	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	a0003	431	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN2_chr2_48309682_48384295	0/0	a0004	431	1	1	0	0	0	0	copy fasta	FOXN2	chr2	48309682	48384295
FOXN3_chr14_89151177_89422233	1/1	a0001	468	230	70	40	84	6	28	copy fasta	FOXN3	chr14	89151177	89422233
FOXN4_chr12_109272978_109314284	1/0	a0001	517	354	90	65	142	15	41	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/1	a0002	517	4	1	1	0	0	1	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0003	517	3	0	1	0	2	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0004	517	2	0	0	2	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0005	517	2	0	0	2	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0006	517	1	0	1	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0007	517	1	1	0	0	0	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXN4_chr12_109272978_109314284	0/0	a0008	517	1	0	0	0	1	0	copy fasta	FOXN4	chr12	109272978	109314284
FOXO1_chr13_40550667_40671641	1/1	a0001	655	337	85	61	143	16	30	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	a0002	655	47	0	5	37	0	5	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	a0003	655	7	0	0	7	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	a0004	655	1	0	0	0	0	1	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	a0005	655	1	1	0	0	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO1_chr13_40550667_40671641	0/0	a0006	655	1	0	0	1	0	0	copy fasta	FOXO1	chr13	40550667	40671641
FOXO3B_chr17_18662629_18687314	1/0	a0001	290	209	29	34	114	9	22	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/1	a0002	290	118	22	31	47	5	12	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0003	290	40	1	1	37	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0004	290	24	6	6	7	0	5	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0005	290	19	8	6	0	1	4	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0006	288	18	17	1	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0007	290	11	2	1	4	1	3	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0008	288	6	6	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0009	291	4	4	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0010	288	3	3	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0011	290	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0012	291	1	1	0	0	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0013	290	1	0	0	0	0	1	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3B_chr17_18662629_18687314	0/0	a0014	290	1	0	0	1	0	0	copy fasta	FOXO3B	chr17	18662629	18687314
FOXO3_chr6_108555917_108689774	1/1	a0001	673	273	87	40	95	16	33	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	a0002	673	3	0	2	0	0	1	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	a0003	673	1	1	0	0	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO3_chr6_108555917_108689774	0/0	a0004	673	1	0	0	1	0	0	copy fasta	FOXO3	chr6	108555917	108689774
FOXO4_chrX_71090851_71108532	1/1	a0001	505	292	77	58	119	7	29	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	a0002	199	1	0	0	1	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	a0003	505	1	0	0	0	0	1	copy fasta	FOXO4	chrX	71090851	71108532
FOXO4_chrX_71090851_71108532	0/0	a0004	505	1	1	0	0	0	0	copy fasta	FOXO4	chrX	71090851	71108532
FOXP1_chr3_70949708_71588728	1/1	a0001	677	96	68	14	2	2	8	copy fasta	FOXP1	chr3	70949708	71588728
FOXP2_chr7_114409815_114698765	1/1	a0001	715	172	62	33	42	8	25	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	a0002	715	1	0	0	0	0	1	copy fasta	FOXP2	chr7	114409815	114698765
FOXP2_chr7_114409815_114698765	0/0	a0003	715	1	0	1	0	0	0	copy fasta	FOXP2	chr7	114409815	114698765
FOXP3_chrX_49245438_49269710	1/1	a0001	431	284	68	52	122	10	30	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0002	431	4	0	0	4	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0003	431	3	3	0	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0004	128	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0005	409	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710