JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXP3_chrX_49245438_49269710	0/0	a0006	431	1	1	0	0	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0007	248	1	0	0	0	0	1	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0008	431	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0009	60	1	0	0	0	0	1	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0010	388	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP3_chrX_49245438_49269710	0/0	a0011	431	1	0	0	1	0	0	copy fasta	FOXP3	chrX	49245438	49269710
FOXP4_chr6_41541381_41607384	1/1	a0001	680	345	83	71	129	18	42	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0002	680	3	0	3	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0003	680	2	0	0	2	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0004	680	1	0	0	1	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0005	680	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0006	680	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0007	680	1	0	1	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0008	680	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXP4_chr6_41541381_41607384	0/0	a0009	680	1	1	0	0	0	0	copy fasta	FOXP4	chr6	41541381	41607384
FOXQ1_chr6_1307098_1319758	0/0	a0001	403	108	18	16	57	4	13	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/1	a0002	403	86	29	34	5	8	9	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0003	403	86	10	13	59	1	3	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0004	403	73	17	9	38	4	5	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0005	403	17	1	1	13	0	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0006	403	9	8	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	1/0	a0007	403	8	5	1	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0008	403	8	0	2	1	1	4	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0009	403	2	0	0	0	0	2	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0010	403	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0011	403	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0012	403	1	0	1	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0013	403	1	1	0	0	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0014	403	1	0	0	0	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0015	403	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0016	403	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0017	403	1	0	0	1	0	0	copy fasta	FOXQ1	chr6	1307098	1319758
FOXQ1_chr6_1307098_1319758	0/0	a0018	403	1	0	0	0	0	1	copy fasta	FOXQ1	chr6	1307098	1319758
FOXR1_chr11_118966761_118986287	1/1	a0001	292	419	91	76	194	14	42	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	a0002	292	5	3	0	0	0	2	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	a0003	292	4	0	0	0	0	4	copy fasta	FOXR1	chr11	118966761	118986287
FOXR1_chr11_118966761_118986287	0/0	a0004	292	2	0	0	2	0	0	copy fasta	FOXR1	chr11	118966761	118986287
FOXR2_chrX_55618400_55631192	0/0	a0001	311	269	31	52	149	8	29	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	1/1	a0002	311	54	41	6	0	0	5	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	a0003	311	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXR2_chrX_55618400_55631192	0/0	a0004	311	1	0	0	1	0	0	copy fasta	FOXR2	chrX	55618400	55631192
FOXRED1_chr11_126264154_126283126	1/1	a0001	486	379	86	70	161	14	46	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0002	486	3	3	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0003	486	3	3	0	0	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0004	486	2	0	0	2	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0005	248	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0006	486	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED1_chr11_126264154_126283126	0/0	a0007	486	1	0	0	1	0	0	copy fasta	FOXRED1	chr11	126264154	126283126
FOXRED2_chr22_36482190_36512040	0/0	a0001	684	143	38	33	49	8	15	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	1/1	a0002	684	93	9	10	58	0	14	copy fasta	FOXRED2	chr22	36482190	36512040