JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FOXRED2_chr22_36482190_36512040	0/0	a0003	684	37	21	8	1	3	4	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0004	684	12	10	1	0	1	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0005	89	11	2	3	4	0	2	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0006	684	6	6	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0007	684	5	0	0	5	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0008	684	3	0	3	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0009	684	2	0	0	2	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0010	684	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0011	684	2	2	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0012	684	1	0	0	1	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0013	684	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0014	684	1	0	0	0	0	1	copy fasta	FOXRED2	chr22	36482190	36512040
FOXRED2_chr22_36482190_36512040	0/0	a0015	684	1	1	0	0	0	0	copy fasta	FOXRED2	chr22	36482190	36512040
FOXS1_chr20_31839303_31850604	1/1	a0001	330	370	92	75	139	18	44	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	a0002	330	5	5	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	a0003	330	2	0	0	1	0	1	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	a0004	330	1	1	0	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	a0005	330	1	0	0	0	0	1	copy fasta	FOXS1	chr20	31839303	31850604
FOXS1_chr20_31839303_31850604	0/0	a0006	330	1	0	1	0	0	0	copy fasta	FOXS1	chr20	31839303	31850604
FPGS_chr9_127797882_127819081	0/1	a0001	587	340	81	50	174	5	29	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	1/0	a0002	587	58	13	16	6	7	15	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	a0003	587	2	0	2	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	a0004	587	2	0	2	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	a0005	587	2	0	0	2	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	a0006	568	1	0	1	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGS_chr9_127797882_127819081	0/0	a0007	587	1	0	1	0	0	0	copy fasta	FPGS	chr9	127797882	127819081
FPGT_chr1_74193242_74213702	1/1	a0001	594	371	83	72	157	14	43	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0002	16	2	0	0	2	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0003	594	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0004	594	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0005	594	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0006	594	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0007	594	1	0	0	0	0	1	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0008	594	1	0	0	1	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPGT_chr1_74193242_74213702	0/0	a0009	594	1	1	0	0	0	0	copy fasta	FPGT	chr1	74193242	74213702
FPR1_chr19_51740773_51756878	0/0	a0001	350	92	23	21	31	2	15	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0002	350	57	3	25	19	5	5	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0003	350	53	15	6	23	1	8	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0004	350	53	17	7	27	0	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0005	350	48	15	7	20	3	3	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0006	350	32	0	0	32	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0007	350	22	1	8	4	1	8	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0008	350	22	1	2	18	1	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0009	350	22	1	5	9	3	4	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0010	350	20	0	0	18	0	2	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0011	350	11	11	0	0	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0012	350	10	0	0	10	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/0	a0013	350	8	0	0	8	0	0	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	0/1	a0014	350	7	2	0	3	0	1	copy fasta	FPR1	chr19	51740773	51756878
FPR1_chr19_51740773_51756878	1/0	a0015	350	6	1	4	0	0	0	copy fasta	FPR1	chr19	51740773	51756878