JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FREM2_chr13_38682077_38892131	0/0	a0044	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0045	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0046	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0047	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0048	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0049	3169	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0050	3169	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0051	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0052	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0053	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0054	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0055	3169	1	1	0	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0056	3169	1	0	1	0	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0057	3169	1	0	0	1	0	0	copy fasta	FREM2	chr13	38682077	38892131
FREM2_chr13_38682077_38892131	0/0	a0058	3169	1	0	0	0	0	1	copy fasta	FREM2	chr13	38682077	38892131
FREM3_chr4_143572302_143705675	0/0	a0001	2139	124	23	27	47	8	19	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0002	2139	45	1	16	12	6	10	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0003	2139	22	7	0	15	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0004	2139	13	9	1	3	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	1/0	a0005	2139	11	9	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0006	2141	7	0	0	7	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0007	2139	6	5	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0008	2139	3	3	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/1	a0009	2139	3	0	0	0	2	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0010	2139	3	2	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0011	2139	3	2	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0012	2139	2	0	2	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0013	2139	2	0	0	2	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0014	2139	2	0	2	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0015	2139	2	2	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0016	2139	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0017	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0018	2139	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0019	2139	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0020	2139	1	0	0	0	0	1	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0021	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0022	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0023	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0024	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0025	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0026	2139	1	1	0	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREM3_chr4_143572302_143705675	0/0	a0027	2139	1	0	1	0	0	0	copy fasta	FREM3	chr4	143572302	143705675
FREY1_chr11_45901534_45912271	1/1	a0001	98	369	91	77	138	16	45	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0002	98	1	0	1	0	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0003	98	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0004	98	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0005	98	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0006	98	1	1	0	0	0	0	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0007	98	1	0	0	0	0	1	copy fasta	FREY1	chr11	45901534	45912271
FREY1_chr11_45901534_45912271	0/0	a0008	98	1	0	0	1	0	0	copy fasta	FREY1	chr11	45901534	45912271