JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRG1_chr4_189935872_189968192	0/1	a0001	258	346	93	56	140	14	42	copy fasta	FRG1	chr4	189935872	189968192
FRG1_chr4_189935872_189968192	0/0	a0002	258	1	1	0	0	0	0	copy fasta	FRG1	chr4	189935872	189968192
FRG2B_chr10_133618895_133631795	0/1	a0001	278	323	77	67	133	15	30	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0002	278	87	6	12	52	3	14	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0003	278	6	6	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0004	278	2	2	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0005	278	1	0	0	1	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0006	278	1	1	0	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2B_chr10_133618895_133631795	0/0	a0007	278	1	0	1	0	0	0	copy fasta	FRG2B	chr10	133618895	133631795
FRG2C_chr3_75659328_75672173	1/1	a0001	282	299	85	64	106	8	34	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0002	282	83	4	16	42	10	11	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0003	282	19	0	0	18	0	1	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0004	282	3	0	0	3	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0005	282	2	2	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0006	282	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0007	282	1	0	0	1	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0008	282	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2C_chr3_75659328_75672173	0/0	a0009	282	1	1	0	0	0	0	copy fasta	FRG2C	chr3	75659328	75672173
FRG2_chr4_190019367_190032256	0/0	a0001	279	386	86	67	176	12	45	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	a0002	279	8	7	0	0	0	1	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	a0003	279	4	0	4	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	a0004	279	1	0	1	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRG2_chr4_190019367_190032256	0/0	a0005	180	1	1	0	0	0	0	copy fasta	FRG2	chr4	190019367	190032256
FRK_chr6_115926149_116065891	1/1	a0001	505	152	60	35	35	8	12	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	a0002	505	113	20	17	54	8	14	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	a0003	505	4	0	0	4	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	a0004	505	2	2	0	0	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	a0005	505	2	0	0	2	0	0	copy fasta	FRK	chr6	115926149	116065891
FRK_chr6_115926149_116065891	0/0	a0006	505	1	0	0	1	0	0	copy fasta	FRK	chr6	115926149	116065891
FRMD1_chr6_168048095_168084212	0/0	a0001	549	293	63	55	125	16	34	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	1/1	a0002	549	64	14	15	30	1	2	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0003	549	28	7	6	11	1	3	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0004	549	4	3	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0005	549	4	4	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0006	549	2	2	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0007	549	1	0	0	0	0	1	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0008	549	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0009	549	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0010	549	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0011	549	1	1	0	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0012	549	1	0	1	0	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD1_chr6_168048095_168084212	0/0	a0013	549	1	0	0	1	0	0	copy fasta	FRMD1	chr6	168048095	168084212
FRMD3_chr9_83239622_83543401	1/1	a0001	597	229	79	41	76	8	23	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	a0002	597	11	0	1	9	0	1	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	a0003	597	1	0	0	1	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD3_chr9_83239622_83543401	0/0	a0004	597	1	1	0	0	0	0	copy fasta	FRMD3	chr9	83239622	83543401
FRMD4A_chr10_13638706_14335924	0/0	a0001	1039	126	56	35	20	5	10	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	a0002	1036	6	4	1	0	1	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	a0003	1039	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924
FRMD4A_chr10_13638706_14335924	0/0	a0004	1039	1	1	0	0	0	0	copy fasta	FRMD4A	chr10	13638706	14335924