JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRMD4B_chr3_69163782_69391088	0/1	a0001	1034	105	22	22	35	6	19	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0002	1034	41	18	6	10	3	4	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0003	1034	41	19	1	13	0	8	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0004	1034	19	5	4	9	0	1	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	1/0	a0005	1034	6	5	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0006	1034	2	1	1	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0007	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0008	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0009	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0010	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0011	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0012	1034	1	0	0	1	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0013	1034	1	0	0	0	1	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0014	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0015	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD4B_chr3_69163782_69391088	0/0	a0016	1034	1	1	0	0	0	0	copy fasta	FRMD4B	chr3	69163782	69391088
FRMD5_chr15_43865764_44200271	0/0	a0001	570	144	74	24	32	2	12	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	a0002	570	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD5_chr15_43865764_44200271	0/0	a0003	570	1	1	0	0	0	0	copy fasta	FRMD5	chr15	43865764	44200271
FRMD6_chr14_51646910_51735727	1/1	a0001	622	385	86	70	179	16	32	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	a0002	622	2	2	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	a0003	622	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	a0004	622	1	1	0	0	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD6_chr14_51646910_51735727	0/0	a0005	622	1	0	0	1	0	0	copy fasta	FRMD6	chr14	51646910	51735727
FRMD7_chrX_132071990_132133020	1/1	a0001	714	170	40	26	75	9	18	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0002	714	18	5	1	10	0	2	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0003	714	12	12	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0004	714	3	0	3	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0005	714	3	3	0	0	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0006	714	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0007	714	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD7_chrX_132071990_132133020	0/0	a0008	714	1	0	0	1	0	0	copy fasta	FRMD7	chrX	132071990	132133020
FRMD8_chr11_65381637_65418525	1/1	a0001	464	340	87	58	141	12	40	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0002	464	13	0	0	13	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0003	464	4	0	0	4	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0004	464	2	2	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0005	464	1	0	0	0	0	1	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0006	464	1	0	0	0	0	1	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0007	464	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0008	464	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0009	464	1	0	0	1	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0010	464	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMD8_chr11_65381637_65418525	0/0	a0011	464	1	1	0	0	0	0	copy fasta	FRMD8	chr11	65381637	65418525
FRMPD1_chr9_37645954_37751904	1/1	a0001	1578	184	41	35	71	8	27	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0002	1578	58	3	2	53	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0003	1578	35	4	10	18	0	3	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0004	1578	17	8	2	6	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0005	1578	5	4	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0006	1578	4	4	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0007	1578	2	1	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904