JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRMPD1_chr9_37645954_37751904	0/0	a0008	1578	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0009	1578	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0010	1578	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0011	1578	2	1	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0012	1578	2	2	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0013	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0014	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0015	1578	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0016	1578	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0017	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0018	1578	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0019	1578	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0020	1578	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0021	1578	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0022	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0023	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0024	1578	1	0	0	0	0	1	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0025	1578	1	0	1	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0026	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0027	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0028	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0029	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0030	1578	1	1	0	0	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD1_chr9_37645954_37751904	0/0	a0031	1578	1	0	0	1	0	0	copy fasta	FRMPD1	chr9	37645954	37751904
FRMPD2_chr10_48151562_48279696	0/1	a0001	1309	94	21	23	30	4	15	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0002	1309	48	5	12	21	3	7	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0003	1309	21	0	6	7	3	5	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0004	1309	17	9	2	0	0	6	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0005	1309	15	13	2	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0006	1309	12	9	2	1	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0007	1309	11	1	5	2	2	1	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0008	1309	9	9	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	1/0	a0009	1309	9	7	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0010	1309	5	0	0	5	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0011	1309	2	0	0	2	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0012	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0013	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0014	1309	1	0	1	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0015	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0016	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0017	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD2_chr10_48151562_48279696	0/0	a0018	1309	1	1	0	0	0	0	copy fasta	FRMPD2	chr10	48151562	48279696
FRMPD3_chrX_107444652_107610251	1/1	a0001	1777	165	57	21	64	5	16	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0002	1777	6	6	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0003	1330	3	1	0	1	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0004	500	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0005	1777	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0006	1777	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0007	1777	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0008	1090	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251