JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRMPD3_chrX_107444652_107610251	0/0	a0009	1588	1	0	1	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0010	1759	1	1	0	0	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0011	1777	1	0	0	1	0	0	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD3_chrX_107444652_107610251	0/0	a0012	1777	1	0	0	0	0	1	copy fasta	FRMPD3	chrX	107444652	107610251
FRMPD4_chrX_12133473_12729523	0/0	a0001	1762	128	26	28	54	4	16	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0002	1762	40	27	8	2	1	2	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0003	1762	2	0	0	2	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0004	1762	1	1	0	0	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0005	973	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0006	1762	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRMPD4_chrX_12133473_12729523	0/0	a0007	624	1	0	0	1	0	0	copy fasta	FRMPD4	chrX	12133473	12729523
FRRS1L_chr9_109125293_109172249	1/1	a0001	293	426	89	70	203	14	48	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	a0002	293	2	2	0	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	a0003	293	1	1	0	0	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1L_chr9_109125293_109172249	0/0	a0004	293	1	0	0	1	0	0	copy fasta	FRRS1L	chr9	109125293	109172249
FRRS1_chr1_99698970_99771635	1/1	a0001	592	256	52	54	106	4	38	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	a0002	592	56	32	6	16	0	2	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	a0003	592	4	4	0	0	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	a0004	592	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRRS1_chr1_99698970_99771635	0/0	a0005	592	1	0	0	1	0	0	copy fasta	FRRS1	chr1	99698970	99771635
FRS2_chr12_69465388_69584793	1/1	a0001	508	340	91	54	155	12	26	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	a0002	508	1	1	0	0	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS2_chr12_69465388_69584793	0/0	a0003	100	1	0	0	1	0	0	copy fasta	FRS2	chr12	69465388	69584793
FRS3_chr6_41765176_41784900	1/1	a0001	492	424	89	78	194	16	45	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0002	492	9	7	2	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0003	492	6	0	0	6	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0004	492	4	0	0	4	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0005	492	3	0	0	3	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0006	492	3	0	3	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0007	492	2	0	1	0	0	1	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0008	492	2	2	0	0	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0009	492	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0010	492	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRS3_chr6_41765176_41784900	0/0	a0011	492	1	0	0	1	0	0	copy fasta	FRS3	chr6	41765176	41784900
FRYL_chr4_48492357_48785279	1/1	a0001	3013	238	47	48	106	16	19	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0002	3013	12	12	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0003	3013	7	0	3	4	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0004	3013	3	3	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0005	3013	2	0	0	2	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0006	3013	2	0	0	2	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0007	3013	2	2	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0008	3013	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0009	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0010	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0011	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0012	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0013	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0014	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0015	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0016	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279