JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FRYL_chr4_48492357_48785279	0/0	a0017	3013	1	1	0	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0018	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0019	3013	1	0	1	0	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0020	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0021	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0022	3013	1	0	0	0	0	1	copy fasta	FRYL	chr4	48492357	48785279
FRYL_chr4_48492357_48785279	0/0	a0023	3013	1	0	0	1	0	0	copy fasta	FRYL	chr4	48492357	48785279
FRY_chr13_32026774_32304125	1/1	a0001	3013	141	39	23	53	8	16	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0002	3013	58	33	13	1	7	4	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0003	3013	23	0	3	18	1	1	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0004	3013	2	0	2	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0005	3013	2	0	2	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0006	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0007	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0008	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0009	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0010	3013	1	0	0	0	0	1	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0011	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0012	3013	1	1	0	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0013	3013	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0014	3013	1	0	0	1	0	0	copy fasta	FRY	chr13	32026774	32304125
FRY_chr13_32026774_32304125	0/0	a0015	3013	1	0	1	0	0	0	copy fasta	FRY	chr13	32026774	32304125
FRZB_chr2_182828275_182871637	1/0	a0001	325	321	65	53	160	8	34	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/1	a0002	325	32	26	1	1	3	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0003	325	9	1	6	0	1	1	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0004	325	2	0	2	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0005	325	2	0	2	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0006	325	1	0	0	1	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0007	325	1	0	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0008	325	1	0	0	0	0	1	copy fasta	FRZB	chr2	182828275	182871637
FRZB_chr2_182828275_182871637	0/0	a0009	325	1	0	1	0	0	0	copy fasta	FRZB	chr2	182828275	182871637
FSBP_chr8_94422716_94441944	1/1	a0001	299	419	95	77	194	14	37	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	a0002	299	5	0	0	5	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	a0003	150	1	0	0	1	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	a0004	299	1	0	1	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	a0005	299	1	1	0	0	0	0	copy fasta	FSBP	chr8	94422716	94441944
FSBP_chr8_94422716_94441944	0/0	a0006	299	1	0	0	0	0	1	copy fasta	FSBP	chr8	94422716	94441944
FSCB_chr14_44499149_44512283	0/0	a0001	837	173	39	26	74	9	25	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/1	a0002	825	113	13	18	71	2	8	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	1/0	a0003	825	49	16	16	13	1	2	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0004	825	39	6	2	28	0	3	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0005	837	36	1	8	14	2	11	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0006	801	6	6	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0007	849	4	0	0	4	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0008	837	4	4	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0009	825	4	4	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0010	825	3	2	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0011	837	3	3	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0012	139	2	2	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0013	825	2	0	0	1	1	0	copy fasta	FSCB	chr14	44499149	44512283