JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FSCB_chr14_44499149_44512283	0/0	a0014	154	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0015	789	1	0	0	0	1	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0016	680	1	0	0	1	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0017	837	1	0	0	0	0	1	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0018	668	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0019	837	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0020	837	1	1	0	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCB_chr14_44499149_44512283	0/0	a0021	837	1	0	1	0	0	0	copy fasta	FSCB	chr14	44499149	44512283
FSCN1_chr7_5587816_5611655	1/1	a0001	493	375	97	76	144	12	44	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	a0002	493	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	a0003	493	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN1_chr7_5587816_5611655	0/0	a0004	493	1	1	0	0	0	0	copy fasta	FSCN1	chr7	5587816	5611655
FSCN2_chr17_81523377_81542130	1/1	a0001	492	418	95	82	175	17	47	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0002	143	5	0	0	5	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0003	492	3	0	2	0	1	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0004	502	1	0	0	1	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0005	492	1	0	0	1	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0006	492	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0007	492	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0008	492	1	1	0	0	0	0	copy fasta	FSCN2	chr17	81523377	81542130
FSCN2_chr17_81523377_81542130	0/0	a0009	492	1	0	0	0	0	1	copy fasta	FSCN2	chr17	81523377	81542130
FSCN3_chr7_127588736_127607144	0/0	a0001	498	356	69	68	167	16	36	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0002	498	31	7	3	15	0	6	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0003	498	7	6	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0004	498	7	7	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0005	498	6	5	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0006	498	3	2	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0007	498	2	2	0	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0008	498	2	0	0	2	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0009	422	2	0	0	2	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0010	498	1	0	0	1	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0011	498	1	0	0	1	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0012	498	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSCN3_chr7_127588736_127607144	0/0	a0013	498	1	0	1	0	0	0	copy fasta	FSCN3	chr7	127588736	127607144
FSD1L_chr9_105443034_105557433	1/1	a0001	530	377	89	63	180	13	30	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	a0002	530	2	0	1	0	1	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1L_chr9_105443034_105557433	0/0	a0003	530	1	1	0	0	0	0	copy fasta	FSD1L	chr9	105443034	105557433
FSD1_chr19_4299598_4328836	1/1	a0001	496	406	98	71	176	15	44	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	a0002	496	3	0	2	0	1	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	a0003	496	1	0	1	0	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	a0004	496	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD1_chr19_4299598_4328836	0/0	a0005	496	1	0	0	1	0	0	copy fasta	FSD1	chr19	4299598	4328836
FSD2_chr15_82750362_82811069	1/0	a0001	749	300	77	53	132	13	24	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0002	749	53	0	11	33	1	8	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/1	a0003	749	22	7	9	0	3	2	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0004	749	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0005	749	2	2	0	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0006	749	1	0	0	0	1	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0007	749	1	0	1	0	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0008	749	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069