Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA3_chr16_2270881_2345728	0/0	a0009	1704	1	1	0	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0010	1704	1	0	0	1	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0011	1704	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	0/0	a0012	1704	1	0	1	0	0	0	copy fasta	ABCA3	chr16	2270881	2345728
ABCA4_chr1_93987834_94126148	1/1	a0001	2273	152	26	29	67	7	21	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0002	2273	44	2	14	24	1	3	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0003	2273	22	20	0	0	1	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0004	2273	7	5	1	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0005	2273	6	3	0	3	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0006	2273	6	6	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0007	2273	6	2	1	3	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0008	2273	5	0	0	5	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0009	2273	3	3	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0010	2273	3	0	0	3	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0011	2273	3	0	1	0	1	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0012	2273	2	1	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0013	2273	2	0	1	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0014	2273	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0015	2273	2	0	0	0	1	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0016	2273	2	0	0	0	0	2	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0017	2273	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0018	2273	2	0	0	0	0	2	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0019	2273	2	2	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0020	2273	2	0	0	0	2	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0021	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0022	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0023	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0024	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0025	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0026	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0027	2273	1	0	0	0	0	1	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0028	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0029	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0030	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0031	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0032	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0033	2273	1	0	0	0	1	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0034	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0035	2273	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0036	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0037	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0038	2273	1	0	0	1	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0039	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0040	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0041	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0042	2273	1	1	0	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0043	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0044	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0045	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	0/0	a0046	2273	1	0	1	0	0	0	copy fasta	ABCA4	chr1	93987834	94126148