Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AHNAK_chr11_62510902_62551806	0/0	a0003	5891	10	10	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0004	5890	7	0	1	6	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0005	5890	7	5	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0006	5890	6	0	0	6	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0007	5890	5	0	0	4	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0008	5890	5	5	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0009	5891	4	4	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0010	5891	4	4	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0011	5890	3	0	3	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0012	5890	3	0	0	3	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0013	5890	3	0	2	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0014	5891	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0015	5890	2	0	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0016	5890	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0017	5890	2	0	2	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0018	5890	2	2	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0019	5890	2	0	0	2	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0020	5891	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0021	5891	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0022	5891	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0023	5891	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0024	5891	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0025	5890	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0026	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0027	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0028	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0029	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0030	5890	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0031	5890	1	0	0	0	1	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0032	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/1	a0033	5890	1	0	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0034	5890	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0035	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0036	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0037	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0038	5890	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0039	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	1/0	a0040	5890	1	0	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0041	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0042	5890	1	0	0	1	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0043	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0044	5823	1	0	1	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0045	5890	1	0	0	0	0	1	copy fasta	AHNAK	chr11	62510902	62551806
AHNAK_chr11_62510902_62551806	0/0	a0046	5890	1	1	0	0	0	0	copy fasta	AHNAK	chr11	62510902	62551806
AHRR_chr5_316714_443285	1/0	a0001	697	121	33	22	49	2	14	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0002	697	67	6	17	31	2	11	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/1	a0003	697	26	0	14	0	4	7	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0004	697	26	24	2	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0005	697	12	2	8	2	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0006	697	4	4	0	0	0	0	copy fasta	AHRR	chr5	316714	443285