JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FSD2_chr15_82750362_82811069	0/0	a0009	749	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSD2_chr15_82750362_82811069	0/0	a0010	305	1	0	0	1	0	0	copy fasta	FSD2	chr15	82750362	82811069
FSHB_chr11_30226014_30240194	1/1	a0001	129	388	88	72	174	12	40	copy fasta	FSHB	chr11	30226014	30240194
FSHR_chr2_48957157_49159515	0/1	a0001	695	171	23	29	92	6	20	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	1/0	a0002	695	136	29	31	51	9	15	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0003	695	37	35	1	1	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0004	695	2	0	0	2	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0005	695	1	1	0	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0006	695	1	0	0	0	1	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0007	695	1	0	1	0	0	0	copy fasta	FSHR	chr2	48957157	49159515
FSHR_chr2_48957157_49159515	0/0	a0008	695	1	0	0	0	0	1	copy fasta	FSHR	chr2	48957157	49159515
FSIP1_chr15_39595031_39787841	1/1	a0001	581	107	9	23	56	6	11	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0002	581	56	3	12	34	0	7	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0003	581	55	42	8	4	1	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0004	581	18	8	2	0	3	5	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0005	581	7	6	1	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0006	581	4	4	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0007	581	2	2	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0008	581	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0009	581	1	0	0	0	0	1	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0010	581	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0011	581	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP1_chr15_39595031_39787841	0/0	a0012	581	1	1	0	0	0	0	copy fasta	FSIP1	chr15	39595031	39787841
FSIP2_chr2_185733804_185838290	0/0	a0001	6907	72	6	8	57	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0002	6907	49	4	6	37	0	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0003	6907	44	16	11	9	0	8	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0004	6907	29	6	6	15	0	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0005	6907	26	2	11	4	1	8	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0006	6907	14	13	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0007	6907	10	0	4	6	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/1	a0008	6907	10	0	4	1	1	3	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0009	6907	8	0	7	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0010	6907	7	0	2	0	1	4	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0011	6907	5	0	0	5	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0012	6907	5	0	1	4	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0013	6907	5	0	4	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0014	6907	5	5	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	1/0	a0015	6907	5	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0016	6907	5	5	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0017	6907	5	0	0	0	3	2	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0018	6907	4	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0019	6907	4	0	1	3	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0020	6907	4	4	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0021	6907	3	0	0	0	0	3	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0022	6907	3	3	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0023	6907	3	3	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0024	6907	3	0	0	3	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0025	6907	2	2	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0026	6907	2	2	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0027	6907	2	0	2	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290