JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FSIP2_chr2_185733804_185838290	0/0	a0028	6907	2	0	0	2	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0029	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0030	6907	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0031	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0032	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0033	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0034	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0035	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0036	6907	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0037	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0038	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0039	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0040	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0041	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0042	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0043	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0044	6907	1	0	0	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0045	6907	1	0	0	0	1	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0046	6907	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0047	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0048	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0049	4105	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0050	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0051	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0052	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0053	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0054	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0055	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0056	6907	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0057	6907	1	0	1	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0058	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0059	6907	1	0	0	1	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0060	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0061	6907	1	0	0	0	0	1	copy fasta	FSIP2	chr2	185733804	185838290
FSIP2_chr2_185733804_185838290	0/0	a0062	6907	1	1	0	0	0	0	copy fasta	FSIP2	chr2	185733804	185838290
FSTL1_chr3_120387293_120455992	1/1	a0001	308	331	82	62	129	14	42	copy fasta	FSTL1	chr3	120387293	120455992
FSTL1_chr3_120387293_120455992	0/0	a0002	308	1	0	0	1	0	0	copy fasta	FSTL1	chr3	120387293	120455992
FSTL3_chr19_671392_688385	1/1	a0001	263	430	94	79	191	18	46	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	a0002	263	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	a0003	220	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	a0004	263	1	0	0	1	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL3_chr19_671392_688385	0/0	a0005	263	1	0	1	0	0	0	copy fasta	FSTL3	chr19	671392	688385
FSTL4_chr5_133191455_133617541	1/1	a0001	842	119	52	20	27	6	12	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0002	842	43	2	13	19	2	7	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0003	842	3	1	1	0	1	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0004	842	2	0	0	0	1	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0005	842	2	0	0	0	0	2	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0006	842	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0007	842	1	0	0	0	0	1	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0008	842	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541