JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FSTL4_chr5_133191455_133617541	0/0	a0009	842	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0010	842	1	0	0	1	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0011	842	1	1	0	0	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL4_chr5_133191455_133617541	0/0	a0012	842	1	0	0	1	0	0	copy fasta	FSTL4	chr5	133191455	133617541
FSTL5_chr4_161378897_162169000	1/1	a0001	847	114	44	21	37	6	4	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	a0002	847	10	0	3	7	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	a0003	847	10	2	3	3	0	2	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	a0004	847	4	4	0	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	a0005	847	3	2	1	0	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FSTL5_chr4_161378897_162169000	0/0	a0006	847	1	0	0	1	0	0	copy fasta	FSTL5	chr4	161378897	162169000
FST_chr5_53475629_53492134	1/1	a0001	344	459	97	74	220	16	50	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	a0002	344	2	1	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FST_chr5_53475629_53492134	0/0	a0003	344	1	0	1	0	0	0	copy fasta	FST	chr5	53475629	53492134
FTCDNL1_chr2_199804272_199856192	1/1	a0001	138	383	80	66	190	10	35	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCDNL1_chr2_199804272_199856192	0/0	a0002	138	1	0	0	0	0	1	copy fasta	FTCDNL1	chr2	199804272	199856192
FTCD_chr21_46131779_46160579	1/1	a0001	541	181	57	41	46	12	23	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0002	541	20	2	3	12	0	3	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0003	541	9	7	2	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0004	541	4	1	1	0	2	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0005	541	3	0	0	3	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0006	541	2	0	2	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0007	541	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0008	541	1	0	1	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0009	541	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0010	541	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0011	541	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0012	530	1	0	0	1	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0013	541	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0014	409	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0015	541	1	1	0	0	0	0	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0016	541	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTCD_chr21_46131779_46160579	0/0	a0017	541	1	0	0	0	0	1	copy fasta	FTCD	chr21	46131779	46160579
FTH1_chr11_61959285_61972634	1/1	a0001	183	389	95	78	156	16	42	copy fasta	FTH1	chr11	61959285	61972634
FTH1_chr11_61959285_61972634	0/0	a0002	183	1	1	0	0	0	0	copy fasta	FTH1	chr11	61959285	61972634
FTHL17_chrX_31066233_31077041	0/0	a0000	0	1	0	0	1	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	1/1	a0001	183	295	75	59	119	13	27	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	a0002	183	35	0	0	29	0	6	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	a0003	183	2	1	1	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	a0004	29	1	0	0	0	0	1	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	a0005	183	1	1	0	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTHL17_chrX_31066233_31077041	0/0	a0006	183	1	1	0	0	0	0	copy fasta	FTHL17	chrX	31066233	31077041
FTL_chr19_48960309_48971879	1/1	a0001	175	405	96	76	167	16	48	copy fasta	FTL	chr19	48960309	48971879
FTL_chr19_48960309_48971879	0/0	a0002	175	1	0	0	1	0	0	copy fasta	FTL	chr19	48960309	48971879
FTMT_chr5_121846882_121857833	1/0	a0001	242	404	96	76	168	16	47	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/1	a0002	242	4	0	2	0	0	1	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	a0003	242	2	0	0	2	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	a0004	242	1	0	1	0	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTMT_chr5_121846882_121857833	0/0	a0005	181	1	0	1	0	0	0	copy fasta	FTMT	chr5	121846882	121857833
FTO_chr16_53699156_54126941	1/1	a0001	505	191	62	30	57	8	32	copy fasta	FTO	chr16	53699156	54126941
FTO_chr16_53699156_54126941	0/0	a0002	505	2	2	0	0	0	0	copy fasta	FTO	chr16	53699156	54126941