JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FTO_chr16_53699156_54126941	0/0	a0003	505	1	0	0	1	0	0	copy fasta	FTO	chr16	53699156	54126941
FTSJ1_chrX_48471199_48491350	1/1	a0001	329	298	76	56	121	9	34	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0002	329	5	4	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0003	329	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0004	318	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0005	203	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0006	329	1	0	1	0	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ1_chrX_48471199_48491350	0/0	a0007	115	1	0	0	1	0	0	copy fasta	FTSJ1	chrX	48471199	48491350
FTSJ3_chr17_63814433_63832663	0/1	a0001	847	255	84	43	93	12	22	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	1/0	a0002	847	101	2	21	60	6	11	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0003	847	5	4	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0004	847	2	2	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0005	847	1	0	1	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0006	836	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0007	847	1	1	0	0	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0008	847	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0009	847	1	0	0	0	0	1	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0010	847	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0011	847	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0012	847	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FTSJ3_chr17_63814433_63832663	0/0	a0013	847	1	0	0	1	0	0	copy fasta	FTSJ3	chr17	63814433	63832663
FUBP1_chr1_77939055_77984072	1/1	a0001	644	273	78	53	100	8	32	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	a0002	644	2	2	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	a0003	644	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	a0004	644	1	1	0	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP1_chr1_77939055_77984072	0/0	a0005	644	1	0	1	0	0	0	copy fasta	FUBP1	chr1	77939055	77984072
FUBP3_chr9_130574577_130643352	1/1	a0001	572	371	88	66	164	10	41	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	a0002	572	4	4	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	a0003	572	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	a0004	572	1	1	0	0	0	0	copy fasta	FUBP3	chr9	130574577	130643352
FUBP3_chr9_130574577_130643352	0/0	a0005	572	1	0	0	0	0	1	copy fasta	FUBP3	chr9	130574577	130643352
FUCA1_chr1_23840077_23873290	1/1	a0001	466	221	65	44	81	8	21	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0002	466	83	7	19	44	8	5	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0003	466	62	16	9	29	2	6	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0004	466	4	4	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0005	466	4	0	4	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0006	466	2	1	1	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0007	466	1	0	1	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0008	466	1	0	0	1	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0009	466	1	1	0	0	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA1_chr1_23840077_23873290	0/0	a0010	466	1	0	0	1	0	0	copy fasta	FUCA1	chr1	23840077	23873290
FUCA2_chr6_143489812_143516720	1/1	a0001	467	326	60	59	163	8	34	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0002	467	76	10	14	40	2	10	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0003	467	24	22	2	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0004	467	12	0	5	0	6	1	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0005	467	2	0	0	2	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0006	467	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0007	467	1	0	0	0	0	1	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0008	467	1	1	0	0	0	0	copy fasta	FUCA2	chr6	143489812	143516720
FUCA2_chr6_143489812_143516720	0/0	a0009	467	1	0	0	1	0	0	copy fasta	FUCA2	chr6	143489812	143516720