JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FUNDC1_chrX_44518639_44547859	1/1	a0001	155	312	80	47	140	11	32	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC1_chrX_44518639_44547859	0/0	a0002	127	1	0	0	1	0	0	copy fasta	FUNDC1	chrX	44518639	44547859
FUNDC2_chrX_155021844_155065304	1/1	a0001	189	267	74	43	113	9	26	copy fasta	FUNDC2	chrX	155021844	155065304
FUOM_chr10_133350158_133363019	1/1	a0001	154	392	97	72	163	18	40	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	a0002	154	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	a0003	154	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	a0004	154	1	1	0	0	0	0	copy fasta	FUOM	chr10	133350158	133363019
FUOM_chr10_133350158_133363019	0/0	a0005	154	1	0	0	1	0	0	copy fasta	FUOM	chr10	133350158	133363019
FURIN_chr15_90863588_90888457	1/1	a0001	794	340	83	62	130	17	46	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0002	794	10	9	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0003	794	2	0	2	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0004	794	2	2	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0005	794	2	0	0	2	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0006	794	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0007	794	1	0	0	0	1	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0008	794	1	1	0	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FURIN_chr15_90863588_90888457	0/0	a0009	794	1	0	1	0	0	0	copy fasta	FURIN	chr15	90863588	90888457
FUS_chr16_31175139_31196605	1/1	a0001	526	344	96	66	131	14	35	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	a0002	526	1	0	0	0	0	1	copy fasta	FUS	chr16	31175139	31196605
FUS_chr16_31175139_31196605	0/0	a0003	526	1	0	0	1	0	0	copy fasta	FUS	chr16	31175139	31196605
FUT10_chr8_33365824_33478146	1/1	a0001	479	170	48	32	67	3	18	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0002	479	61	7	6	38	1	9	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0003	479	12	12	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0004	479	7	6	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0005	479	5	4	0	0	0	1	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0006	479	4	3	1	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0007	479	4	4	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0008	479	2	2	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0009	479	1	0	0	1	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0010	479	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT10_chr8_33365824_33478146	0/0	a0011	479	1	1	0	0	0	0	copy fasta	FUT10	chr8	33365824	33478146
FUT11_chr10_73767276_73781219	1/1	a0001	492	383	78	59	192	12	40	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	a0002	492	4	3	1	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	a0003	492	3	3	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	a0004	492	2	2	0	0	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	a0005	492	1	0	0	1	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT11_chr10_73767276_73781219	0/0	a0006	492	1	0	0	1	0	0	copy fasta	FUT11	chr10	73767276	73781219
FUT1_chr19_48743011_48757641	1/1	a0001	365	363	93	75	134	13	46	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	a0002	365	72	0	5	63	0	4	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	a0003	365	1	0	0	0	1	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	a0004	365	1	1	0	0	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT1_chr19_48743011_48757641	0/0	a0005	353	1	0	0	1	0	0	copy fasta	FUT1	chr19	48743011	48757641
FUT2_chr19_48690971_48710951	0/0	a0000	0	4	0	0	0	0	4	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	1/1	a0001	343	198	29	48	95	6	18	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0002	153	91	47	22	0	6	16	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0003	343	58	0	0	58	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0004	343	11	0	3	1	0	7	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0005	343	9	9	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0006	343	5	3	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0007	343	3	0	0	3	0	0	copy fasta	FUT2	chr19	48690971	48710951