JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FUT2_chr19_48690971_48710951	0/0	a0008	343	3	0	2	0	1	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0009	343	2	0	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0010	343	2	0	2	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0011	343	2	2	0	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0012	343	1	0	1	0	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0013	343	1	0	0	0	1	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0014	201	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0015	220	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0016	343	1	0	0	0	0	1	copy fasta	FUT2	chr19	48690971	48710951
FUT2_chr19_48690971_48710951	0/0	a0017	293	1	0	0	1	0	0	copy fasta	FUT2	chr19	48690971	48710951
FUT4_chr11_94538921_94554895	1/1	a0001	530	392	75	69	189	12	45	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0002	530	23	20	3	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0003	530	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0004	530	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0005	530	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0006	530	1	0	0	0	0	1	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0007	530	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0008	530	1	1	0	0	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT4_chr11_94538921_94554895	0/0	a0009	530	1	0	0	1	0	0	copy fasta	FUT4	chr11	94538921	94554895
FUT5_chr19_5860826_5875540	0/0	a0001	374	186	24	39	101	5	17	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/1	a0002	374	156	46	27	60	8	14	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	1/0	a0003	374	67	13	10	29	0	14	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0004	374	26	9	6	7	3	1	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0005	374	5	5	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0006	374	2	0	0	2	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0007	374	2	2	0	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0008	374	2	1	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0009	374	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0010	374	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0011	374	1	0	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0012	374	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0013	374	1	0	0	1	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT5_chr19_5860826_5875540	0/0	a0014	374	1	0	1	0	0	0	copy fasta	FUT5	chr19	5860826	5875540
FUT6_chr19_5825408_5844702	1/1	a0001	359	182	33	34	77	8	28	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0002	359	121	10	25	80	1	5	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0003	359	49	18	17	8	4	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0004	359	33	21	4	4	0	4	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0005	359	19	5	0	11	0	3	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0006	314	17	0	1	10	0	6	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0007	359	3	0	1	0	2	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0008	359	3	3	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0009	359	2	0	0	0	0	2	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0010	359	2	2	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0011	359	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0012	359	1	0	0	0	1	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0013	359	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0014	367	1	0	0	1	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT6_chr19_5825408_5844702	0/0	a0015	359	1	1	0	0	0	0	copy fasta	FUT6	chr19	5825408	5844702
FUT7_chr9_137025174_137037088	1/1	a0001	342	337	84	77	119	18	37	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0002	342	9	0	3	6	0	0	copy fasta	FUT7	chr9	137025174	137037088