JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FUT7_chr9_137025174_137037088	0/0	a0003	342	3	1	2	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0004	342	2	0	2	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0005	342	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0006	342	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0007	342	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0008	342	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0009	342	1	0	0	0	0	1	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0010	342	1	0	0	1	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT7_chr9_137025174_137037088	0/0	a0011	342	1	1	0	0	0	0	copy fasta	FUT7	chr9	137025174	137037088
FUT8_chr14_65407730_65749121	1/1	a0001	575	316	97	58	123	12	24	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	a0002	575	49	0	6	31	2	10	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	a0003	575	8	0	0	8	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT8_chr14_65407730_65749121	0/0	a0004	575	1	1	0	0	0	0	copy fasta	FUT8	chr14	65407730	65749121
FUT9_chr6_96010974_96220612	0/1	a0001	359	285	55	48	143	12	26	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	1/0	a0002	359	34	26	4	3	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUT9_chr6_96010974_96220612	0/0	a0003	359	1	1	0	0	0	0	copy fasta	FUT9	chr6	96010974	96220612
FUZ_chr19_49801866_49818292	1/1	a0001	418	345	71	69	143	14	46	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0002	418	26	7	4	15	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0003	418	23	1	2	16	0	4	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0004	418	7	7	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0005	418	2	0	2	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0006	418	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0007	418	2	2	0	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0008	108	1	0	0	1	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0009	357	1	0	0	1	0	0	copy fasta	FUZ	chr19	49801866	49818292
FUZ_chr19_49801866_49818292	0/0	a0010	418	1	0	1	0	0	0	copy fasta	FUZ	chr19	49801866	49818292
FXN_chr9_69030752_69084076	1/1	a0001	210	418	85	70	200	18	43	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	a0002	210	7	7	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	a0003	210	4	4	0	0	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	a0004	210	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	a0005	210	1	0	0	1	0	0	copy fasta	FXN	chr9	69030752	69084076
FXN_chr9_69030752_69084076	0/0	a0006	210	1	0	0	0	0	1	copy fasta	FXN	chr9	69030752	69084076
FXR1_chr3_180907670_180987753	1/1	a0001	621	318	73	64	125	18	36	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	a0002	621	1	0	0	1	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR1_chr3_180907670_180987753	0/0	a0003	621	1	1	0	0	0	0	copy fasta	FXR1	chr3	180907670	180987753
FXR2_chr17_7586230_7619897	1/1	a0001	673	424	95	80	190	14	43	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	a0002	37	1	1	0	0	0	0	copy fasta	FXR2	chr17	7586230	7619897
FXR2_chr17_7586230_7619897	0/0	a0003	673	1	0	0	0	0	1	copy fasta	FXR2	chr17	7586230	7619897
FXYD1_chr19_35133824_35148109	1/1	a0001	92	407	98	76	176	13	42	copy fasta	FXYD1	chr19	35133824	35148109
FXYD1_chr19_35133824_35148109	0/0	a0002	92	1	0	0	0	1	0	copy fasta	FXYD1	chr19	35133824	35148109
FXYD2_chr11_117815057_117829744	1/1	a0001	66	481	99	86	226	18	50	copy fasta	FXYD2	chr11	117815057	117829744
FXYD2_chr11_117815057_117829744	0/0	a0002	66	1	1	0	0	0	0	copy fasta	FXYD2	chr11	117815057	117829744
FXYD3_chr19_35110823_35129324	1/1	a0001	87	392	88	73	168	14	47	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	a0002	87	17	3	2	9	0	3	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	a0003	87	3	0	3	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	a0004	87	1	1	0	0	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD3_chr19_35110823_35129324	0/0	a0005	87	1	0	0	1	0	0	copy fasta	FXYD3	chr19	35110823	35129324
FXYD4_chr10_43366636_43381335	1/1	a0001	89	413	89	73	191	17	41	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	a0002	89	12	0	1	7	1	3	copy fasta	FXYD4	chr10	43366636	43381335
FXYD4_chr10_43366636_43381335	0/0	a0003	89	1	1	0	0	0	0	copy fasta	FXYD4	chr10	43366636	43381335