JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FXYD5_chr19_35149735_35174881	0/0	a0001	178	199	26	25	132	2	14	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/1	a0002	178	179	68	44	30	7	29	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	a0003	178	43	0	0	42	1	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	1/0	a0004	178	37	2	15	10	6	3	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	a0005	178	2	2	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	a0006	178	1	1	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD5_chr19_35149735_35174881	0/0	a0007	178	1	1	0	0	0	0	copy fasta	FXYD5	chr19	35149735	35174881
FXYD6_chr11_117831981_117881658	1/1	a0001	95	429	96	73	198	16	44	copy fasta	FXYD6	chr11	117831981	117881658
FXYD6_chr11_117831981_117881658	0/0	a0002	95	1	0	1	0	0	0	copy fasta	FXYD6	chr11	117831981	117881658
FXYD7_chr19_35138255_35159302	1/1	a0001	80	444	100	84	196	18	44	copy fasta	FXYD7	chr19	35138255	35159302
FYB1_chr5_39100252_39224563	1/0	a0001	829	178	57	15	87	5	13	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/1	a0002	829	109	18	17	47	5	21	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0003	829	8	7	1	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0004	829	7	0	2	5	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0005	829	5	0	3	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0006	829	3	3	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0007	829	2	2	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0008	829	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0009	829	2	2	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0010	829	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0011	829	2	0	0	2	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0012	829	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0013	829	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0014	829	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0015	829	1	1	0	0	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0016	829	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB1_chr5_39100252_39224563	0/0	a0017	829	1	0	0	1	0	0	copy fasta	FYB1	chr5	39100252	39224563
FYB2_chr1_56713789_56824404	1/1	a0001	728	322	54	66	166	8	26	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0002	728	24	23	1	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0003	728	12	3	0	4	0	5	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0004	728	4	4	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0005	728	3	0	0	0	0	3	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0006	462	2	0	0	2	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0007	728	2	0	0	0	0	2	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0008	728	2	1	1	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0009	728	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0010	728	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0011	728	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0012	728	1	0	0	1	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0013	728	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0014	728	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0015	728	1	0	0	0	0	1	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0016	728	1	1	0	0	0	0	copy fasta	FYB2	chr1	56713789	56824404
FYB2_chr1_56713789_56824404	0/0	a0017	728	1	0	0	0	0	1	copy fasta	FYB2	chr1	56713789	56824404
FYCO1_chr3_45912903_46000824	0/0	a0001	1478	125	38	10	66	6	5	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0002	1478	113	6	22	71	6	8	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0003	1478	22	1	7	1	2	11	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0004	1478	17	15	2	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	1/1	a0005	1478	16	5	5	0	0	4	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0006	1478	9	0	0	9	0	0	copy fasta	FYCO1	chr3	45912903	46000824