JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FYCO1_chr3_45912903_46000824	0/0	a0007	1478	5	5	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0008	1478	4	4	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0009	1478	4	2	2	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0010	1478	3	3	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0011	1478	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0012	1478	2	2	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0013	1478	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0014	1478	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0015	1478	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0016	1478	1	0	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0017	1478	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0018	1478	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0019	1478	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0020	1478	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0021	1478	1	0	1	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0022	1478	1	0	0	0	0	1	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0023	1478	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0024	1478	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0025	1478	1	1	0	0	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYCO1_chr3_45912903_46000824	0/0	a0026	1478	1	0	0	1	0	0	copy fasta	FYCO1	chr3	45912903	46000824
FYN_chr6_111655332_111878452	1/1	a0001	537	234	82	38	90	2	20	copy fasta	FYN	chr6	111655332	111878452
FYTTD1_chr3_197744883_197792596	0/1	a0001	318	163	37	34	53	7	31	copy fasta	FYTTD1	chr3	197744883	197792596
FYTTD1_chr3_197744883_197792596	1/0	a0002	318	93	47	12	17	3	13	copy fasta	FYTTD1	chr3	197744883	197792596
FZD10_chr12_130157464_130170740	1/1	a0001	581	447	95	84	198	18	50	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	a0002	581	1	1	0	0	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	a0003	581	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD10_chr12_130157464_130170740	0/0	a0004	581	1	0	0	1	0	0	copy fasta	FZD10	chr12	130157464	130170740
FZD1_chr7_91259433_91276326	1/1	a0001	647	271	60	45	130	7	27	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	a0002	648	142	32	27	63	5	15	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	a0003	647	1	0	0	1	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	a0004	647	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD1_chr7_91259433_91276326	0/0	a0005	648	1	1	0	0	0	0	copy fasta	FZD1	chr7	91259433	91276326
FZD2_chr17_44552484_44566262	1/1	a0001	565	392	91	71	166	18	44	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	a0002	565	2	2	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	a0003	565	1	1	0	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD2_chr17_44552484_44566262	0/0	a0004	565	1	0	1	0	0	0	copy fasta	FZD2	chr17	44552484	44566262
FZD3_chr8_28489212_28579258	1/1	a0001	666	325	86	48	151	10	28	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	a0002	631	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	a0003	672	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD3_chr8_28489212_28579258	0/0	a0004	666	1	0	0	1	0	0	copy fasta	FZD3	chr8	28489212	28579258
FZD4_chr11_86940679_86960395	1/1	a0001	537	448	84	77	228	12	45	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0002	537	2	0	1	0	0	1	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0003	537	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0004	537	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0005	537	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0006	537	1	0	0	1	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0007	537	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD4_chr11_86940679_86960395	0/0	a0008	537	1	1	0	0	0	0	copy fasta	FZD4	chr11	86940679	86960395
FZD5_chr2_207757598_207774906	1/0	a0001	585	434	94	73	200	18	48	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/1	a0002	585	6	0	4	0	0	1	copy fasta	FZD5	chr2	207757598	207774906