JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
FZD5_chr2_207757598_207774906	0/0	a0003	585	1	0	0	0	0	1	copy fasta	FZD5	chr2	207757598	207774906
FZD5_chr2_207757598_207774906	0/0	a0004	585	1	0	1	0	0	0	copy fasta	FZD5	chr2	207757598	207774906
FZD6_chr8_103293898_103337866	0/0	a0001	706	160	29	28	76	6	21	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	1/0	a0002	706	133	37	12	68	5	10	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0003	706	48	19	11	5	5	8	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0004	706	9	0	9	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0005	706	6	3	3	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0006	706	4	4	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0007	706	3	1	1	0	0	1	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0008	706	1	1	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/0	a0009	706	1	0	0	1	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD6_chr8_103293898_103337866	0/1	a0010	706	1	0	0	0	0	0	copy fasta	FZD6	chr8	103293898	103337866
FZD7_chr2_202028855_202043441	1/1	a0001	574	413	91	76	184	15	45	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	a0002	574	3	3	0	0	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	a0003	154	1	0	0	0	0	1	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	a0004	574	1	0	0	0	1	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	a0005	574	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD7_chr2_202028855_202043441	0/0	a0006	574	1	0	0	1	0	0	copy fasta	FZD7	chr2	202028855	202043441
FZD8_chr10_35633247_35647296	0/0	a0000	0	5	0	0	5	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	1/1	a0001	694	394	93	70	175	14	40	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	a0002	694	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	a0003	694	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	a0004	694	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	a0005	689	1	0	0	1	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD8_chr10_35633247_35647296	0/0	a0006	694	1	1	0	0	0	0	copy fasta	FZD8	chr10	35633247	35647296
FZD9_chr7_73428778_73441120	1/1	a0001	591	360	80	72	153	13	40	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0002	591	1	0	0	0	1	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0003	591	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0004	591	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0005	591	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0006	591	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZD9_chr7_73428778_73441120	0/0	a0007	591	1	0	0	1	0	0	copy fasta	FZD9	chr7	73428778	73441120
FZR1_chr19_3501311_3543334	1/1	a0001	493	310	96	64	95	9	44	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	a0002	493	1	0	0	1	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	a0003	493	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	a0004	493	1	1	0	0	0	0	copy fasta	FZR1	chr19	3501311	3543334
FZR1_chr19_3501311_3543334	0/0	a0005	493	1	0	0	0	1	0	copy fasta	FZR1	chr19	3501311	3543334
G0S2_chr1_209670412_209681390	1/1	a0001	103	423	85	68	206	18	44	copy fasta	G0S2	chr1	209670412	209681390
G0S2_chr1_209670412_209681390	0/0	a0002	103	1	1	0	0	0	0	copy fasta	G0S2	chr1	209670412	209681390
G2E3_chr14_30554158_30625064	1/1	a0001	706	344	82	55	169	8	28	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	a0002	706	8	7	1	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	a0003	706	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	a0004	706	1	1	0	0	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	a0005	706	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G2E3_chr14_30554158_30625064	0/0	a0006	706	1	0	0	1	0	0	copy fasta	G2E3	chr14	30554158	30625064
G3BP1_chr5_151766954_151817785	1/1	a0001	466	341	94	66	127	16	36	copy fasta	G3BP1	chr5	151766954	151817785
G3BP1_chr5_151766954_151817785	0/0	a0002	466	1	0	0	1	0	0	copy fasta	G3BP1	chr5	151766954	151817785
G3BP2_chr4_75637786_75678411	1/1	a0001	482	330	84	72	116	16	40	copy fasta	G3BP2	chr4	75637786	75678411
G6PC1_chr17_42895799_42919438	1/1	a0001	357	365	95	68	142	16	42	copy fasta	G6PC1	chr17	42895799	42919438
G6PC1_chr17_42895799_42919438	0/0	a0002	357	1	1	0	0	0	0	copy fasta	G6PC1	chr17	42895799	42919438