Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AHRR_chr5_316714_443285	0/0	a0007	697	3	3	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0008	697	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0009	178	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0010	697	1	0	0	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0011	697	1	0	0	1	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0012	697	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0013	697	1	0	1	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0014	697	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0015	697	1	0	0	0	1	0	copy fasta	AHRR	chr5	316714	443285
AHRR_chr5_316714_443285	0/0	a0016	697	1	1	0	0	0	0	copy fasta	AHRR	chr5	316714	443285
AHR_chr7_17293652_17351147	1/1	a0001	848	242	53	52	94	14	27	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0002	848	115	31	12	63	2	7	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0003	848	4	4	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0004	848	2	0	0	2	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0005	848	2	0	2	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0006	848	1	0	0	1	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0007	848	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0008	848	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0009	848	1	0	1	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHR_chr7_17293652_17351147	0/0	a0010	848	1	1	0	0	0	0	copy fasta	AHR	chr7	17293652	17351147
AHSA1_chr14_77453093_77474472	1/1	a0001	338	308	94	66	92	14	40	copy fasta	AHSA1	chr14	77453093	77474472
AHSG_chr3_186608060_186626318	0/0	a0001	367	297	66	51	138	13	29	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	1/1	a0002	367	121	21	32	51	4	11	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0003	367	8	7	1	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0004	367	8	0	1	0	1	6	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0005	367	3	3	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0006	367	1	1	0	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0007	367	1	0	1	0	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSG_chr3_186608060_186626318	0/0	a0008	367	1	0	0	1	0	0	copy fasta	AHSG	chr3	186608060	186626318
AHSP_chr16_31522900_31533803	1/1	a0001	102	383	93	74	158	16	40	copy fasta	AHSP	chr16	31522900	31533803
AHSP_chr16_31522900_31533803	0/0	a0002	102	5	5	0	0	0	0	copy fasta	AHSP	chr16	31522900	31533803
AICDA_chr12_8597170_8617859	1/1	a0001	198	426	86	75	198	18	47	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0002	116	26	6	4	15	0	1	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0003	198	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0004	198	1	0	0	1	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0005	198	1	0	1	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0006	198	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0007	116	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AICDA_chr12_8597170_8617859	0/0	a0008	198	1	1	0	0	0	0	copy fasta	AICDA	chr12	8597170	8617859
AIDA_chr1_222663013_222717491	1/1	a0001	306	367	92	60	158	12	43	copy fasta	AIDA	chr1	222663013	222717491
AIDA_chr1_222663013_222717491	0/0	a0002	306	1	0	0	0	0	1	copy fasta	AIDA	chr1	222663013	222717491
AIF1L_chr9_131091531_131128144	1/1	a0001	150	424	94	74	188	16	50	copy fasta	AIF1L	chr9	131091531	131128144
AIF1_chr6_31610234_31622015	0/1	a0001	147	379	68	73	173	18	46	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	a0002	147	56	26	7	22	0	1	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	a0003	147	1	0	0	1	0	0	copy fasta	AIF1	chr6	31610234	31622015
AIF1_chr6_31610234_31622015	0/0	a0004	147	1	0	0	0	0	1	copy fasta	AIF1	chr6	31610234	31622015
AIFM1_chrX_130124362_130170841	1/1	a0001	613	255	59	53	104	9	28	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	a0002	613	2	2	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	a0003	613	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	a0004	329	1	0	0	1	0	0	copy fasta	AIFM1	chrX	130124362	130170841